Traj31 Gene Detail

Summary

• Symbol
  Traj31
• Name
  T cell receptor alpha joining 31
• Synonyms
  Gm17008

• Feature Type
  gene segment
• IDs
  MGI:4440519
  NCBI Gene: 100124358
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54425352-54425408 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.68 cM

Strain
Comparison

• SNPs within 2kb
  46 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4440519	gene segment	Chr14:54425352-54425408 (+)
129S1/SvImJ	ENSMUSG00200044503	gene segment	Chr14:43017604-43017660 (+)
A/J	ENSMUSG00195035102	gene segment	Chr14:43241876-43241932 (+)
AKR/J	ENSMUSG00220036604	gene segment	Chr14:42569816-42569872 (+)
BALB/cJ	ENSMUSG00180053177	gene segment	Chr14:42865640-42865696 (+)
C3H/HeJ	ENSMUSG00175051551	gene segment	Chr14:44548083-44548139 (+)
C57BL/6NJ	ENSMUSG00215050968	gene segment	Chr14:42747649-42747705 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002152	gene segment	Chr14:45620942-45620998 (+)
CAST/EiJ	ENSTCUG00005048964	gene segment	Chr14:44544324-44544380 (+)
CBA/J	ENSMUSG00210048481	gene segment	Chr14:43228646-43228702 (+)
DBA/2J	ENSMUSG00185056232	gene segment	Chr14:48269319-48269375 (+)
FVB/NJ	ENSMUSG00205045465	gene segment	Chr14:42611572-42611628 (+)
JF1/MsJ	ENSUMUG00000055645	gene segment	Chr14:59527872-59527928 (+)
LP/J	ENSMUSG00230053042	gene segment	Chr14:60383597-60383653 (+)
NOD/ShiLtJ	ENSMUSG00190051870	gene segment	Chr14:42972396-42972452 (+)
NZO/HlLtJ	ENSMUSG00225051976	gene segment	Chr14:50681688-50681744 (+)
PWK/PhJ	ENSLUMG00010050618	gene segment	Chr14:42451705-42451761 (+)
SPRET/EiJ	ENSMSPG00010046444	gene segment	Chr14:45842498-45842554 (+)
WSB/EiJ	ENSIUOG00005046773	gene segment	Chr14:42443445-42443501 (+)

Homology

• Human Ortholog
  TRAJ31, T cell receptor alpha joining 31

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAJ31, T cell receptor alpha joining 31
  
• Links
  HGNC:12061

  NCBI Gene ID: 28724

  UniProt: A0A075B700

  
  
• Chr Location
  14q11.2; chr14:22510968-22511024 (+)  GRCh38

---

• MGI Vertebrate Homology
  Traj31 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAJ31
• Gene Tree
  Traj31
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj31
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076898 (Evidence)
• NCBI Gene
  100124358

Representative Sequences			Length	Strain/Species
genomic	100124358	NCBI Gene Model | MGI Sequence Detail	57	C57BL/6J
polypeptide	A0A0G2JDF0	UniProt | EBI | MGI Sequence Detail	19	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61