Traj50 Gene Detail

Summary

• Symbol
  Traj50
• Name
  T cell receptor alpha joining 50
• Synonyms
  Gm17007

• Feature Type
  gene segment
• IDs
  MGI:4440517
  NCBI Gene: 100124338
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54405047-54405109 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM

Strain
Comparison

• SNPs within 2kb
  22 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4440517	gene segment	Chr14:54405047-54405109 (+)
129S1/SvImJ	ENSMUSG00200042855	gene segment	Chr14:42997364-42997426 (+)
A/J	ENSMUSG00195038596	gene segment	Chr14:43221633-43221695 (+)
AKR/J	ENSMUSG00220031813	gene segment	Chr14:42549559-42549621 (+)
BALB/cJ	ENSMUSG00180053582	gene segment	Chr14:42845403-42845465 (+)
C3H/HeJ	ENSMUSG00175051314	gene segment	Chr14:44527844-44527906 (+)
C57BL/6NJ	ENSMUSG00215050906	gene segment	Chr14:42727342-42727404 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002135	gene segment	Chr14:45600773-45600835 (+)
CAST/EiJ	ENSTCUG00005048982	gene segment	Chr14:44524093-44524155 (+)
CBA/J	ENSMUSG00210045876	gene segment	Chr14:43208402-43208464 (+)
DBA/2J	ENSMUSG00185055059	gene segment	Chr14:48249050-48249112 (+)
FVB/NJ	ENSMUSG00205047948	gene segment	Chr14:42591311-42591373 (+)
JF1/MsJ	ENSUMUG00000055410	gene segment	Chr14:59507546-59507608 (+)
LP/J	ENSMUSG00230052885	gene segment	Chr14:60363360-60363422 (+)
NOD/ShiLtJ	ENSMUSG00190048138	gene segment	Chr14:42952130-42952192 (+)
NZO/HlLtJ	ENSMUSG00225051627	gene segment	Chr14:50661445-50661507 (+)
PWK/PhJ	ENSLUMG00010051540	gene segment	Chr14:42431462-42431524 (+)
SPRET/EiJ	ENSMSPG00010049335	gene segment	Chr14:45822075-45822137 (+)
WSB/EiJ	ENSIUOG00005048041	gene segment	Chr14:42423145-42423207 (+)

Homology

• Gene Tree
  Traj50
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj50
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076881 (Evidence)
• NCBI Gene
  100124338

Representative Sequences			Length	Strain/Species
genomic	100124338	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
polypeptide	A0A0G2JEE5	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj50:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125549	Chr14:54403978-54404003 (+)	-1,056 bp
Tssr125550	Chr14:54404006-54404033 (+)	-1,027 bp