Trgj1 Gene Detail

Summary

• Symbol
  Trgj1
• Name
  T cell receptor gamma joining 1
• Synonyms
  Gm17003

• Feature Type
  gene segment
• IDs
  MGI:4440480
  NCBI Gene: 100126431
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr13:19394513-19394572 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 6.89 cM

Strain
Comparison

• SNPs within 2kb
  131 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4440480	gene segment	Chr13:19394513-19394572 (+)
129S1/SvImJ	ENSMUSG00200014663	gene segment	Chr13:16621667-16621726 (+)
A/J	ENSMUSG00195039317	gene segment	Chr13:15756624-15756683 (+)
AKR/J	ENSMUSG00220033001	gene segment	Chr13:15674163-15674222 (+)
BALB/cJ	ENSMUSG00180039333	gene segment	Chr13:16117268-16117327 (+)
C3H/HeJ	ENSMUSG00175035662	gene segment	Chr13:16219310-16219369 (+)
C57BL/6NJ	ENSMUSG00215029863	gene segment	Chr13:16150896-16150955 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005014509	gene segment	Chr13:16218237-16218296 (+)
CBA/J	ENSMUSG00210031398	gene segment	Chr13:16073902-16073961 (+)
DBA/2J	ENSMUSG00185014903	gene segment	Chr13:16775267-16775326 (+)
FVB/NJ	ENSMUSG00205052968	gene segment	Chr13:15913738-15913797 (+)
JF1/MsJ	ENSUMUG00000021834	gene segment	Chr13:16494771-16494830 (+)
LP/J	ENSMUSG00230035206	gene segment	Chr13:26175124-26175183 (+)
NOD/ShiLtJ	ENSMUSG00190025250	gene segment	Chr13:16047785-16047844 (+)
NZO/HlLtJ	ENSMUSG00225032424	gene segment	Chr13:19913878-19913937 (+)
PWK/PhJ	ENSLUMG00010034554	gene segment	Chr13:15481365-15481424 (+)
SPRET/EiJ	ENSMSPG00010020232	gene segment	Chr13:15154104-15154163 (+)
WSB/EiJ	ENSIUOG00005035483	gene segment	Chr13:15372279-15372338 (+)

Homology

• Gene Tree
  Trgj1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Genomic Mutations
  1 involving Trgj1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000104962 (Evidence)
• NCBI Gene
  100126431

Representative Sequences			Length	Strain/Species
genomic	100126431	NCBI Gene Model | MGI Sequence Detail	60	C57BL/6J
polypeptide	A0A0G2JGW7	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:91304 Xiong N, et al., Positive selection of dendritic epidermal gammadelta T cell precursors in the fetal thymus determines expression of skin-homing receptors. Immunity. 2004 Jul;21(1):121-31
• Latest
  J:153581 Uche UN, et al., Recombination signal sequence-associated restriction on TCRdelta gene rearrangement affects the development of tissue-specific gammadelta T cells. J Immunol. 2009 Oct 15;183(8):4931-9

TSS for Trgj1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118525	Chr13:19394484-19394500 (+)	-21 bp