Gm16998 Gene Detail

Summary

• Symbol
  Gm16998
• Name
  predicted gene, 16998

• Feature Type
  lncRNA gene
• IDs
  MGI:4439922
  NCBI Gene: 100502920
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr10:53952018-53957177 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 27.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  210 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439922	lncRNA gene	Chr10:53952002-53957183 (+)
129S1/SvImJ	ENSMUSG00200028836	lncRNA gene	Chr10:50864385-50869544 (+)
A/J	ENSMUSG00195027977	lncRNA gene	Chr10:51117509-51122668 (+)
AKR/J	ENSMUSG00220041450	lncRNA gene	Chr10:50808632-50813789 (+)
BALB/cJ	ENSMUSG00180028250	lncRNA gene	Chr10:51247106-51252265 (+)
C3H/HeJ	ENSMUSG00175026287	lncRNA gene	Chr10:50990005-50995164 (+)
C57BL/6NJ	ENSMUSG00215034060	lncRNA gene	Chr10:50765178-50770337 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004637	lincRNA gene	Chr10:48859968-48865118 (+)
CAST/EiJ	ENSTCUG00005008667	lncRNA gene	Chr10:50972193-50977367 (+)
CBA/J	ENSMUSG00210036897	lncRNA gene	Chr10:50895795-50900954 (+)
DBA/2J	ENSMUSG00185042296	lncRNA gene	Chr10:51047558-51052717 (+)
FVB/NJ	ENSMUSG00205036526	lncRNA gene	Chr10:50962858-50968016 (+)
JF1/MsJ	ENSUMUG00000029249	lncRNA gene	Chr10:50727123-50732302 (+)
LP/J	ENSMUSG00230023944	lncRNA gene	Chr10:52848972-52854131 (+)
NOD/ShiLtJ	ENSMUSG00190039183	lncRNA gene	Chr10:51214321-51219480 (+)
NZO/HlLtJ	ENSMUSG00225022774	lncRNA gene	Chr10:57129845-57135004 (+)
PWK/PhJ	ENSLUMG00010024183	lncRNA gene	Chr10:50893332-50898474 (+)
SPRET/EiJ	ENSMSPG00010027206	lncRNA gene	Chr10:52289421-52294541 (+)
WSB/EiJ	ENSIUOG00005043090	lncRNA gene	Chr10:50851924-50857086 (+)

Homology

• Gene Tree
  Gm16998
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16998
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  1

• Ensembl
  ENSMUSG00000097069 (Evidence)
• NCBI Gene
  100502920

Representative Sequences			Length	Strain/Species
genomic	100502920	NCBI Gene Model | MGI Sequence Detail	5160	C57BL/6J
transcript	NR_038016	RefSeq | MGI Sequence Detail	1230	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16998:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93344	Chr10:53950116-53950123 (+)	-1,898 bp
Tssr93345	Chr10:53950605-53950620 (+)	-1,405 bp
Tssr93346	Chr10:53950633-53950668 (+)	-1,367 bp