Gm16984 Gene Detail

Summary

• Symbol
  Gm16984
• Name
  predicted gene, 16984

• Feature Type
  lncRNA gene
• IDs
  MGI:4439908
  NCBI Gene: 102640991
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr13:35147933-35167289 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 14.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  696 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439908	lncRNA gene	Chr13:35147865-35267346 (+)
129S1/SvImJ	ENSMUSG00200013595	lncRNA gene	Chr13:32343918-32370384 (+)
A/J	ENSMUSG00195033144	lncRNA gene	Chr13:31429633-31456086 (+)
AKR/J	ENSMUSG00220034307	lncRNA gene	Chr13:31218919-31245372 (+)
BALB/cJ	ENSMUSG00180008550	lncRNA gene	Chr13:31733412-31759868 (+)
C3H/HeJ	ENSMUSG00175015153	lncRNA gene	Chr13:31682629-31709076 (+)
C57BL/6NJ	ENSMUSG00215019427	lncRNA gene	Chr13:31872574-31899044 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005036751	lncRNA gene	Chr13:31755252-31788161 (+)
CBA/J	ENSMUSG00210011807	lncRNA gene	Chr13:31695132-31721585 (+)
DBA/2J	ENSMUSG00185032221	lncRNA gene	Chr13:32514587-32541039 (+)
FVB/NJ	ENSMUSG00205030559	lncRNA gene	Chr13:31402367-31428841 (+)
JF1/MsJ	ENSUMUG00000037633	lncRNA gene	Chr13:32099833-32126997 (+)
LP/J	ENSMUSG00230016759	lncRNA gene	Chr13:41838954-41865412 (+)
NOD/ShiLtJ	ENSMUSG00190012726	lncRNA gene	Chr13:31924433-31950904 (+)
NZO/HlLtJ	ENSMUSG00225035147	lncRNA gene	Chr13:35649953-35676409 (+)
PWK/PhJ	ENSLUMG00010029924	lncRNA gene	Chr13:30930781-30957852 (+)
SPRET/EiJ	ENSMSPG00010011583	lncRNA gene	Chr13:30833635-30860415 (+)
WSB/EiJ	ENSIUOG00005030896	lncRNA gene	Chr13:31085303-31111741 (+)

Homology

• Gene Tree
  Gm16984
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16984
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  48
• RefSeq
  2

• Ensembl
  ENSMUSG00000085962 (Evidence)
• NCBI Gene
  102640991

Representative Sequences			Length	Strain/Species
genomic	102640991	NCBI Gene Model | MGI Sequence Detail	19357	C57BL/6J
transcript	XR_873227	RefSeq | MGI Sequence Detail	521	C57BL/6J

References

• Summaries
  All 12

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44