Gm16982 Gene Detail

Summary

• Symbol
  Gm16982
• Name
  predicted gene, 16982

• Feature Type
  lncRNA gene
• IDs
  MGI:4439906
  NCBI Gene: 100036523
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:141189979-141193660 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 87.00 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  215 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439906	lncRNA gene	Chr7:141189979-141193673 (-)
129S1/SvImJ	ENSMUSG00200047119	lncRNA gene	Chr7:127755579-127759260 (-)
A/J	ENSMUSG00195040865	lncRNA gene	Chr7:132238084-132241765 (-)
AKR/J	ENSMUSG00220035989	lncRNA gene	Chr7:125719764-125723445 (-)
BALB/cJ	ENSMUSG00180040510	lncRNA gene	Chr7:128930242-128933923 (-)
C3H/HeJ	ENSMUSG00175042329	lncRNA gene	Chr7:129658484-129662165 (-)
C57BL/6NJ	ENSMUSG00215048282	lncRNA gene	Chr7:128925084-128928765 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004090	antisense lncRNA gene	Chr7:143815239-143819703 (-)
CAST/EiJ	ENSTCUG00005051713	lncRNA gene	Chr7:132230073-132233746 (-)
CBA/J	ENSMUSG00210032912	lncRNA gene	Chr7:129416483-129420164 (-)
DBA/2J	ENSMUSG00185017589	lncRNA gene	Chr7:133695018-133698699 (-)
FVB/NJ	ENSMUSG00205045661	lncRNA gene	Chr7:129337307-129340988 (-)
JF1/MsJ	ENSUMUG00000050775	lncRNA gene	Chr7:138773982-138777691 (-)
LP/J	ENSMUSG00230043057	lncRNA gene	Chr7:139858490-139862171 (-)
NOD/ShiLtJ	ENSMUSG00190034130	lncRNA gene	Chr7:129523929-129527610 (-)
NZO/HlLtJ	ENSMUSG00225052286	lncRNA gene	Chr7:138067667-138071348 (-)
PWK/PhJ	ENSLUMG00010048343	lncRNA gene	Chr7:127905955-127909690 (-)
SPRET/EiJ	ENSMSPG00010043991	lncRNA gene	Chr7:129352289-129355941 (-)
WSB/EiJ	ENSIUOG00005036208	lncRNA gene	Chr7:130258159-130261841 (-)

Homology

• Gene Tree
  Gm16982
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Gm16982
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000097170 (Evidence)
• NCBI Gene
  100036523

Representative Sequences			Length	Strain/Species
genomic	100036523	NCBI Gene Model | MGI Sequence Detail	3682	C57BL/6J
transcript	NR_040337	RefSeq | MGI Sequence Detail	2620	C57BL/6

References

• Summaries
  All 7

  Phenotypes 3
• Earliest
  J:65007 Cattanach BM, et al., Two imprinted gene mutations: three phenotypes. Hum Mol Genet. 2000 Sep 22;9(15):2263-73
• Latest
  J:187438 Peters J, et al., Identification and characterisation of imprinted genes in the mouse. Brief Funct Genomic Proteomic. 2004 Feb;2(4):320-33

TSS for Gm16982:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr75670	Chr7:141193625-141193640 (-)	27 bp