Gm16976 Gene Detail

Summary

• Symbol
  Gm16976
• Name
  predicted gene, 16976

• Feature Type
  lncRNA gene
  BioType Conflict
  
• IDs
  MGI:4439900
  NCBI Gene: 102637302
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:45096038-45212415 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 22.59 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  538 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439900	lncRNA gene	Chr14:45096038-45212415 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015268	unclassified non-coding RNA gene	Chr14:38435788-38575270 (+)
A/J	MGP_AJ_G0015242	unclassified non-coding RNA gene	Chr14:37280702-37422173 (+)
AKR/J	MGP_AKRJ_G0015205	unclassified non-coding RNA gene	Chr14:38777790-38921559 (+)
BALB/cJ	MGP_BALBcJ_G0015206	unclassified non-coding RNA gene	Chr14:37362727-37480146 (+)
C3H/HeJ	MGP_C3HHeJ_G0015030	unclassified non-coding RNA gene	Chr14:38585329-38716374 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015661	unclassified non-coding RNA gene	Chr14:40078423-40253767 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0014581	unclassified non-coding RNA gene	Chr14:35692696-35798772 (+)
CBA/J	MGP_CBAJ_G0015010	unclassified non-coding RNA gene	Chr14:41360425-41531227 (+)
DBA/2J	MGP_DBA2J_G0015103	unclassified non-coding RNA gene	Chr14:37218640-37359706 (+)
FVB/NJ	MGP_FVBNJ_G0015111	unclassified non-coding RNA gene	Chr14:36990135-37120979 (+)
LP/J	MGP_LPJ_G0015184	unclassified non-coding RNA gene	Chr14:38777047-38886443 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015138	unclassified non-coding RNA gene	Chr14:40753575-40929935 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015700	unclassified non-coding RNA gene	Chr14:38335311-38462087 (+)
PWK/PhJ	MGP_PWKPhJ_G0014373	unclassified non-coding RNA gene	Chr14:34080676-34202255 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014160	unclassified non-coding RNA gene	Chr14:34332859-34573670 (+)
WSB/EiJ	MGP_WSBEiJ_G0014688	unclassified non-coding RNA gene	Chr14:38384194-38529515 (+)

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16976
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  34
• RefSeq
  1

• Ensembl
  ENSMUSG00000085500 (Evidence), ENSMUSG00000121411 (Evidence) (also overlaps Gm41142)
• NCBI Gene
  102637302

Representative Sequences			Length	Strain/Species
genomic	102637302	NCBI Gene Model | MGI Sequence Detail	116378	C57BL/6J
transcript	NR_167765	RefSeq | MGI Sequence Detail	1902	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;

TSS for Gm16976:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125198	Chr14:45164275-45164281 (+)	68,240 bp