Gm16958 Gene Detail

Summary

• Symbol
  Gm16958
• Name
  predicted gene, 16958

• Feature Type
  lncRNA gene
• IDs
  MGI:4439882
  NCBI Gene: 100862268
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr3:126954953-126961937 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 56.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  271 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439882	lncRNA gene	Chr3:126954953-126961939 (+)
129S1/SvImJ	ENSMUSG00200003848	lncRNA gene	Chr3:123688723-123695682 (+)
A/J	ENSMUSG00195009232	lncRNA gene	Chr3:123827330-123834290 (+)
AKR/J	ENSMUSG00220022602	lncRNA gene	Chr3:122269221-122276205 (+)
BALB/cJ	ENSMUSG00180003863	lncRNA gene	Chr3:123754571-123761530 (+)
C3H/HeJ	ENSMUSG00175014432	lncRNA gene	Chr3:123308269-123315240 (+)
C57BL/6NJ	ENSMUSG00215028674	lncRNA gene	Chr3:124100204-124107194 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003445	antisense lncRNA gene	Chr3:120442546-120449390 (+)
CAST/EiJ	ENSTCUG00005003750	lncRNA gene	Chr3:124381271-124388177 (+)
CBA/J	ENSMUSG00210004397	lncRNA gene	Chr3:123931511-123938470 (+)
DBA/2J	ENSMUSG00185026431	lncRNA gene	Chr3:124543897-124550895 (+)
FVB/NJ	ENSMUSG00205008392	lncRNA gene	Chr3:122898187-122905176 (+)
JF1/MsJ	ENSUMUG00000030618	lncRNA gene	Chr3:123299439-123306398 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190001489	lncRNA gene	Chr3:124943781-124950788 (+)
NZO/HlLtJ	ENSMUSG00225004020	lncRNA gene	Chr3:128987827-128994811 (+)
PWK/PhJ	ENSLUMG00010015629	lncRNA gene	Chr3:123330368-123337280 (+)
SPRET/EiJ	ENSMSPG00010012988	lncRNA gene	Chr3:124216523-124223471 (+)
WSB/EiJ	ENSIUOG00005017697	lncRNA gene	Chr3:124112867-124119899 (+)

Homology

• Gene Tree
  Gm16958
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Gene trapped
  1
• Genomic Mutations
  1 involving Gm16958
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  28
• RefSeq
  2

• Ensembl
  ENSMUSG00000097456 (Evidence)
• NCBI Gene
  100862268

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097456	Ensembl Gene Model | MGI Sequence Detail	6985	C57BL/6J
transcript	ENSMUST00000180603	Ensembl | MGI Sequence Detail	1765	Not Applicable

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 4
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14