Gm16938 Gene Detail

Summary

• Symbol
  Gm16938
• Name
  predicted gene, 16938

• Feature Type
  lncRNA gene
• IDs
  MGI:4439862
  NCBI Gene: 330599
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr7:97826401-97834011 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 7, 53.62 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  311 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439862	lncRNA gene	Chr7:97826401-97860604 (+)
129S1/SvImJ	ENSMUSG00200050753	lncRNA gene	Chr7:84651041-84653251 (+)
A/J	ENSMUSG00195039911	lncRNA gene	Chr7:89155981-89158191 (+)
AKR/J	ENSMUSG00220051320	lncRNA gene	Chr7:82573301-82575509 (+)
BALB/cJ	ENSMUSG00180036194	lncRNA gene	Chr7:85829401-85831611 (+)
C3H/HeJ	ENSMUSG00175024113	lncRNA gene	Chr7:86478636-86480825 (+)
C57BL/6NJ	ENSMUSG00215037628	lncRNA gene	Chr7:85669285-85671492 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013805	unclassified non-coding RNA gene	Chr7:100864714-100866886 (+)
CAST/EiJ	ENSTCUG00005034833	lncRNA gene	Chr7:89057268-89059460 (+)
CBA/J	ENSMUSG00210025647	lncRNA gene	Chr7:86326541-86328730 (+)
DBA/2J	ENSMUSG00185033531	lncRNA gene	Chr7:90653319-90655508 (+)
FVB/NJ	ENSMUSG00205037810	lncRNA gene	Chr7:86327762-86329970 (+)
JF1/MsJ	ENSUMUG00000051477	lncRNA gene	Chr7:95551857-95554049 (+)
LP/J	ENSMUSG00230044729	lncRNA gene	Chr7:96768034-96770242 (+)
NOD/ShiLtJ	ENSMUSG00190022535	lncRNA gene	Chr7:86602595-86604803 (+)
NZO/HlLtJ	ENSMUSG00225050974	lncRNA gene	Chr7:94954477-94956686 (+)
PWK/PhJ	ENSLUMG00010050503	lncRNA gene	Chr7:84774296-84776499 (+)
SPRET/EiJ	ENSMSPG00010013225	lncRNA gene	Chr7:86014766-86016980 (+)
WSB/EiJ	ENSIUOG00005010959	lncRNA gene	Chr7:86937678-86939886 (+)

Homology

• Gene Tree
  Gm16938
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16938
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  4

• Ensembl
  ENSMUSG00000097749 (Evidence)
• NCBI Gene
  330599

Representative Sequences			Length	Strain/Species
genomic	330599	NCBI Gene Model | MGI Sequence Detail	7611	C57BL/6J
transcript	NR_045969	RefSeq | MGI Sequence Detail	3186	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 16

  Phenotypes 10
• Earliest
  J:88307 Giometti CS, et al., The analysis of recessive lethal mutations in mice by using two-dimensional gel electrophoresis of liver proteins. Mutat Res. 1990 Sep;242(1):47-55
• Latest
  J:123187 Cohen-Barak O, et al., Stem cell transplantation demonstrates that Sox6 represses epsilon y globin expression in definitive erythropoiesis of adult mice. Exp Hematol. 2007 Mar;35(3):358-67

TSS for Gm16938:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr68010	Chr7:97827538-97827630 (+)	1,183 bp