Traj51 Pseudogene Detail

Summary

• Symbol
  Traj51
• Name
  T cell receptor alpha joining 51
• Synonyms
  Gm16924

• Feature Type
  pseudogenic gene segment
• IDs
  MGI:4439848
  NCBI Gene: 100124337
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54403696-54403738 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  16 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439848	pseudogenic gene segment	Chr14:54403696-54403738 (+)
129S1/SvImJ	ENSMUSG00200042850	pseudogenic gene segment	Chr14:42996008-42996050 (+)
A/J	ENSMUSG00195038577	pseudogenic gene segment	Chr14:43220277-43220319 (+)
AKR/J	ENSMUSG00220031784	pseudogenic gene segment	Chr14:42548203-42548245 (+)
BALB/cJ	ENSMUSG00180053576	pseudogenic gene segment	Chr14:42844047-42844089 (+)
C3H/HeJ	ENSMUSG00175051307	pseudogenic gene segment	Chr14:44526488-44526530 (+)
C57BL/6NJ	ENSMUSG00215050900	pseudogenic gene segment	Chr14:42725991-42726033 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002196	pseudogenic gene segment	Chr14:45599396-45599438 (+)
CAST/EiJ	ENSTCUG00005048971	pseudogenic gene segment	Chr14:44522731-44522773 (+)
CBA/J	ENSMUSG00210045860	pseudogenic gene segment	Chr14:43207046-43207088 (+)
DBA/2J	ENSMUSG00185055053	pseudogenic gene segment	Chr14:48247694-48247736 (+)
FVB/NJ	ENSMUSG00205047938	pseudogenic gene segment	Chr14:42589955-42589997 (+)
JF1/MsJ	ENSUMUG00000055402	pseudogenic gene segment	Chr14:59506195-59506237 (+)
LP/J	ENSMUSG00230052921	pseudogenic gene segment	Chr14:60362004-60362046 (+)
NOD/ShiLtJ	ENSMUSG00190048122	pseudogenic gene segment	Chr14:42950774-42950816 (+)
NZO/HlLtJ	ENSMUSG00225051747	pseudogenic gene segment	Chr14:50660089-50660131 (+)
PWK/PhJ	ENSLUMG00010051534	pseudogenic gene segment	Chr14:42430106-42430148 (+)
SPRET/EiJ	ENSMSPG00010049346	pseudogenic gene segment	Chr14:45820716-45820758 (+)
WSB/EiJ	ENSIUOG00005048032	pseudogenic gene segment	Chr14:42421789-42421831 (+)

Homology

• Gene Tree
  Traj51
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  1
• Targeted
  3
• Genomic Mutations
  4 involving Traj51
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000076880 (Evidence)
• NCBI Gene
  100124337

Representative Sequences			Length	Strain/Species
genomic	100124337	NCBI Gene Model | MGI Sequence Detail	43	C57BL/6J

References

• Summaries
  All 19

  Phenotypes 4
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61