Traj48 Gene Detail

Summary

• Symbol
  Traj48
• Name
  T cell receptor alpha joining 48
• Synonyms
  Gm16923

• Feature Type
  gene segment
• IDs
  MGI:4439847
  NCBI Gene: 100124340
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54407265-54407325 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.68 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  29 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439847	gene segment	Chr14:54407265-54407325 (+)
129S1/SvImJ	ENSMUSG00200042840	gene segment	Chr14:42999587-42999647 (+)
A/J	ENSMUSG00195038552	gene segment	Chr14:43223857-43223917 (+)
AKR/J	ENSMUSG00220031739	gene segment	Chr14:42551783-42551843 (+)
BALB/cJ	ENSMUSG00180053566	gene segment	Chr14:42847626-42847686 (+)
C3H/HeJ	ENSMUSG00175051294	gene segment	Chr14:44530067-44530127 (+)
C57BL/6NJ	ENSMUSG00215050895	gene segment	Chr14:42729560-42729620 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002137	gene segment	Chr14:45602977-45603037 (+)
CAST/EiJ	ENSTCUG00005049009	gene segment	Chr14:44526315-44526375 (+)
CBA/J	ENSMUSG00210045838	gene segment	Chr14:43210626-43210686 (+)
DBA/2J	ENSMUSG00185055046	gene segment	Chr14:48251268-48251328 (+)
FVB/NJ	ENSMUSG00205047918	gene segment	Chr14:42593531-42593591 (+)
JF1/MsJ	ENSUMUG00000055385	gene segment	Chr14:59509763-59509823 (+)
LP/J	ENSMUSG00230052917	gene segment	Chr14:60365584-60365644 (+)
NOD/ShiLtJ	ENSMUSG00190048100	gene segment	Chr14:42954351-42954411 (+)
NZO/HlLtJ	ENSMUSG00225051737	gene segment	Chr14:50663668-50663728 (+)
PWK/PhJ	ENSLUMG00010051526	gene segment	Chr14:42433685-42433745 (+)
SPRET/EiJ	ENSMSPG00010049341	gene segment	Chr14:45824290-45824350 (+)
WSB/EiJ	ENSIUOG00005048011	gene segment	Chr14:42425367-42425427 (+)

Homology

• Human Ortholog
  TRAJ48, T cell receptor alpha joining 48

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAJ48, T cell receptor alpha joining 48
  
• Links
  HGNC:12079

  NCBI Gene ID: 28707

  
  
• Chr Location
  14q11.2; chr14:22490491-22490553 (+)  GRCh38

---

• MGI Vertebrate Homology
  Traj48 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAJ48
• Gene Tree
  Traj48
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj48
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076883 (Evidence)
• NCBI Gene
  100124340

Representative Sequences			Length	Strain/Species
genomic	100124340	NCBI Gene Model | MGI Sequence Detail	61	C57BL/6J
polypeptide	A0A0G2JG88	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61