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Traj42 Gene Detail
Summary
  • Symbol
    Traj42
  • Name
    T cell receptor alpha joining 42
  • Synonyms
    Gm16922
Location &
Maps
more
  • Sequence Map
    Chr14:54413230-54413293 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.68 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    65 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439846
 gene segment Chr14:54413230-54413293 (+)
129S1/SvImJ ENSMUSG00200045261
 gene segment Chr14:43005507-43005570 (+)
A/J ENSMUSG00195037181
 gene segment Chr14:43229775-43229838 (+)
AKR/J ENSMUSG00220035938
 gene segment Chr14:42557709-42557772 (+)
BALB/cJ ENSMUSG00180053193
 gene segment Chr14:42853544-42853607 (+)
C3H/HeJ ENSMUSG00175052205
 gene segment Chr14:44535986-44536049 (+)
C57BL/6NJ ENSMUSG00215049321
 gene segment Chr14:42735526-42735589 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002143
 gene segment Chr14:45608811-45608874 (+)
CAST/EiJ ENSTCUG00005050234
 gene segment Chr14:44532221-44532284 (+)
CBA/J ENSMUSG00210046670
 gene segment Chr14:43216545-43216608 (+)
DBA/2J ENSMUSG00185056252
 gene segment Chr14:48257197-48257260 (+)
FVB/NJ ENSMUSG00205047353
 gene segment Chr14:42599462-42599525 (+)
JF1/MsJ ENSUMUG00000054729
 gene segment Chr14:59515756-59515819 (+)
LP/J ENSMUSG00230052980
 gene segment Chr14:60371502-60371565 (+)
NOD/ShiLtJ ENSMUSG00190048295
 gene segment Chr14:42960279-42960342 (+)
NZO/HlLtJ ENSMUSG00225051900
 gene segment Chr14:50669592-50669655 (+)
PWK/PhJ ENSLUMG00010051810
 gene segment Chr14:42439603-42439666 (+)
SPRET/EiJ ENSMSPG00010049108
 gene segment Chr14:45830261-45830324 (+)
WSB/EiJ ENSIUOG00005046957
 gene segment Chr14:42431281-42431344 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100124346 NCBI Gene Model | MGI Sequence Detail 64 C57BL/6J ±  kb
polypeptide A0A0G2JFN0 UniProt | EBI | MGI Sequence Detail 21 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
  • GlyGen
    A0A0G2JFN0 2 sites, 1 O-linked glycan (2 sites)
References
more
  • Summaries
    All 18
    Phenotypes 2
  • Earliest
    J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory