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Traj3 Gene Detail
Summary
  • Symbol
    Traj3
  • Name
    T cell receptor alpha joining 3
  • Synonyms
    Gm16916
Location &
Maps
more
  • Sequence Map
    Chr14:54454749-54454814 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.70 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    54 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439840
 gene segment Chr14:54454749-54454814 (+)
129S1/SvImJ ENSMUSG00200045498
 gene segment Chr14:43047048-43047113 (+)
A/J ENSMUSG00195033871
 gene segment Chr14:43271329-43271394 (+)
AKR/J ENSMUSG00220031684
 gene segment Chr14:42599269-42599334 (+)
BALB/cJ ENSMUSG00180052119
 gene segment Chr14:42895092-42895157 (+)
C3H/HeJ ENSMUSG00175052423
 gene segment Chr14:44577529-44577594 (+)
C57BL/6NJ ENSMUSG00215050173
 gene segment Chr14:42777053-42777118 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0002177
 gene segment Chr14:45650207-45650272 (+)
CAST/EiJ ENSTCUG00005050404
 gene segment Chr14:44573698-44573763 (+)
CBA/J ENSMUSG00210046269
 gene segment Chr14:43258095-43258160 (+)
DBA/2J ENSMUSG00185054675
 gene segment Chr14:48298785-48298850 (+)
FVB/NJ ENSMUSG00205046592
 gene segment Chr14:42641031-42641096 (+)
JF1/MsJ ENSUMUG00000055806
 gene segment Chr14:59557251-59557316 (+)
LP/J ENSMUSG00230053172
 gene segment Chr14:60413040-60413105 (+)
NOD/ShiLtJ ENSMUSG00190051051
 gene segment Chr14:43001846-43001911 (+)
NZO/HlLtJ ENSMUSG00225051443
 gene segment Chr14:50711133-50711198 (+)
PWK/PhJ ENSLUMG00010048117
 gene segment Chr14:42481154-42481219 (+)
SPRET/EiJ ENSMSPG00010046649
 gene segment Chr14:45871709-45871774 (+)
WSB/EiJ ENSIUOG00005044532
 gene segment Chr14:42472848-42472913 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    25
  • RefSeq
    1
  • UniProt
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 100124399 NCBI Gene Model | MGI Sequence Detail 66 C57BL/6J ±  kb
polypeptide A0A0G2JFD7 UniProt | EBI | MGI Sequence Detail 22 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
References
more
  • Summaries
    All 18
    Phenotypes 2
  • Earliest
    J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
  • Latest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory