Gm16861 Gene Detail

Summary

• Symbol
  Gm16861
• Name
  predicted gene, 16861

• Feature Type
  lncRNA gene
• IDs
  MGI:4439785
  NCBI Gene: 100503704
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr16:4753028-4757449 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 16, 2.48 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  34 from dbSNP Build 142
• Strain Annotations
  16

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439785	lncRNA gene	Chr16:4752913-4757497 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0005635	lincRNA gene	Chr16:1454333-1458870 (-)
A/J	MGP_AJ_G0005622	lincRNA gene	Chr16:1265389-1269952 (-)
AKR/J	MGP_AKRJ_G0005601	lincRNA gene	Chr16:1459586-1464123 (-)
BALB/cJ	MGP_BALBcJ_G0005602	lincRNA gene	Chr16:1420155-1424692 (-)
C3H/HeJ	MGP_C3HHeJ_G0005549	lincRNA gene	Chr16:1480921-1485458 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0005760	lincRNA gene	Chr16:1541796-1546333 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0005493	lincRNA gene	Chr16:1485482-1490511 (-)
CBA/J	MGP_CBAJ_G0005539	lincRNA gene	Chr16:1617486-1622023 (-)
DBA/2J	MGP_DBA2J_G0005554	lincRNA gene	Chr16:1370072-1374609 (-)
FVB/NJ	MGP_FVBNJ_G0005581	lincRNA gene	Chr16:1364946-1369509 (-)
LP/J	MGP_LPJ_G0005638	lincRNA gene	Chr16:1444529-1449066 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0005566	lincRNA gene	Chr16:1474890-1479453 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0005760	lincRNA gene	Chr16:1433645-1438182 (-)
PWK/PhJ	MGP_PWKPhJ_G0005441	lincRNA gene	Chr16:1443022-1447478 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0005543	lincRNA gene	Chr16:1446094-1450657 (-)

Homology

• Gene Tree
  Gm16861
  

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000097397 (Evidence)
• NCBI Gene
  100503704

Representative Sequences			Length	Strain/Species
genomic	100503704	NCBI Gene Model | MGI Sequence Detail	4422	C57BL/6J
transcript	NR_037666	RefSeq | MGI Sequence Detail	1531	Not Specified

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 4
• Earliest
  J:63103 Mouse Genome Database and National Center for Biotechnology Information, Entrez Gene Load. Database Release. 2000;
• Latest
  J:91388 Mouse Genome Informatics Scientific Curators, Obtaining and Loading Genome Assembly Coordinates from Ensembl Annotations. 2005;

TSS for Gm16861:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr139817	Chr16:4757471-4757488 (-)	-31 bp
Tssr139816	Chr16:4757443-4757467 (-)	-6 bp