Ighv1-14 Gene Detail

Summary

• Symbol
  Ighv1-14
• Name
  immunoglobulin heavy variable 1-14
• Synonyms
  Gm16857

• Feature Type
  gene segment
  BioType Conflict
  
• IDs
  MGI:4439781
  NCBI Gene: 629863
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr12:114610192-114610485 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 12, 62.41 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  398 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439781	gene segment	Chr12:114610192-114610676 (-)
129S1/SvImJ	ENSMUSG00200029352	pseudogenic gene segment	Chr12:106302844-106303328 (-)
A/J	ENSMUSG00195050050	pseudogenic gene segment	Chr12:109076941-109077425 (-)
AKR/J	ENSMUSG00220043409	pseudogenic gene segment	Chr12:106788334-106788818 (-)
BALB/cJ	ENSMUSG00180051873	pseudogenic gene segment	Chr12:108534940-108535424 (-)
C3H/HeJ	ENSMUSG00175046029	pseudogenic gene segment	Chr12:110773235-110773719 (-)
C57BL/6NJ	ENSMUSG00215051363	pseudogenic gene segment	Chr12:107400046-107400530 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0000110	pseudogenic gene segment	Chr12:109146951-109147435 (-)
CAST/EiJ	ENSTCUG00005043587	pseudogenic gene segment	Chr12:107530628-107531112 (-)
CBA/J	ENSMUSG00210036971	pseudogenic gene segment	Chr12:107849746-107850230 (-)
DBA/2J	ENSMUSG00185036021	pseudogenic gene segment	Chr12:109835114-109835598 (-)
FVB/NJ	ENSMUSG00205045738	pseudogenic gene segment	Chr12:106818381-106818865 (-)
JF1/MsJ	ENSUMUG00000032070	pseudogenic gene segment	Chr12:114418750-114419234 (-)
LP/J	ENSMUSG00230049234	pseudogenic gene segment	Chr12:116662718-116663202 (-)
NOD/ShiLtJ	ENSMUSG00190036775	pseudogenic gene segment	Chr12:106245856-106246340 (-)
NZO/HlLtJ	no annotation
PWK/PhJ	ENSLUMG00010050730	pseudogenic gene segment	Chr12:108104249-108104733 (-)
SPRET/EiJ	ENSMSPG00010020348	pseudogenic gene segment	Chr12:110806302-110806786 (-)
WSB/EiJ	ENSIUOG00005038170	pseudogenic gene segment	Chr12:107311793-107312277 (-)

Homology

• Gene Tree
  Ighv1-14
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104422 (Evidence)
• NCBI Gene
  629863

Representative Sequences			Length	Strain/Species
genomic	629863	NCBI Gene Model | MGI Sequence Detail	294	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Ighv1-14:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118092	Chr12:114610674-114610677 (-)	-191 bp