Gm16845 Gene Detail

Summary

• Symbol
  Gm16845
• Name
  predicted gene, 16845

• Feature Type
  lncRNA gene
• IDs
  MGI:4439769
  NCBI Gene: 100503652
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:21982298-21997424 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 8.23 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  451 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439769	lncRNA gene	Chr9:21982298-21997427 (+)
129S1/SvImJ	ENSMUSG00200050398	lncRNA gene	Chr9:18936870-18951987 (+)
A/J	ENSMUSG00195040059	lncRNA gene	Chr9:18773516-18788637 (+)
AKR/J	ENSMUSG00220037177	lncRNA gene	Chr9:18775926-18791045 (+)
BALB/cJ	ENSMUSG00180044528	lncRNA gene	Chr9:18907799-18922922 (+)
C3H/HeJ	ENSMUSG00175045489	lncRNA gene	Chr9:18870328-18885448 (+)
C57BL/6NJ	ENSMUSG00215039285	lncRNA gene	Chr9:18867622-18882743 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006745	lincRNA gene	Chr9:18075873-18090802 (+)
CAST/EiJ	ENSTCUG00005034598	lncRNA gene	Chr9:18913340-18928485 (+)
CBA/J	ENSMUSG00210046357	lncRNA gene	Chr9:18851264-18866380 (+)
DBA/2J	ENSMUSG00185027290	lncRNA gene	Chr9:18966555-18981675 (+)
FVB/NJ	ENSMUSG00205045700	lncRNA gene	Chr9:19202305-19217192 (+)
JF1/MsJ	ENSUMUG00000047995	lncRNA gene	Chr9:19067927-19083054 (+)
LP/J	ENSMUSG00230044758	lncRNA gene	Chr9:19361494-19376385 (+)
NOD/ShiLtJ	ENSMUSG00190042876	lncRNA gene	Chr9:18895271-18910154 (+)
NZO/HlLtJ	ENSMUSG00225051393	lncRNA gene	Chr9:19308502-19323618 (+)
PWK/PhJ	ENSLUMG00010048988	lncRNA gene	Chr9:18959123-18974255 (+)
SPRET/EiJ	ENSMSPG00010026551	lncRNA gene	Chr9:19182581-19197470 (+)
WSB/EiJ	ENSIUOG00005046049	lncRNA gene	Chr9:18437335-18452223 (+)

Homology

• Gene Tree
  Gm16845
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  4
• Gene trapped
  4
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  10

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2

• Ensembl
  ENSMUSG00000096981 (Evidence)
• NCBI Gene
  100503652

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000096981	Ensembl Gene Model | MGI Sequence Detail	15127	C57BL/6J
transcript	ENSMUST00000216270	Ensembl | MGI Sequence Detail	1515	Not Applicable

Molecular
Reagents

• All nucleic 10

  cDNA 10

References

• Summaries
  All 9

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16845:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr84068	Chr9:21982298-21982347 (+)	25 bp