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Ighv7-3 Pseudogene Detail
Summary
  • Symbol
    Ighv7-3
  • Name
    immunoglobulin heavy variable 7-3
  • Synonyms
    Gm16842
Location &
Maps
more
  • Sequence Map
    Chr12:114116800-114117264 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome 12, 62.30 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    82 from dbSNP Build 142
  • Strain Annotations
    6
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439766
pseudogenic gene segment Chr12:114116800-114117264 (-)
129S1/SvImJ MGP_129S1SvImJ_G0000058
gene segment Chr12:116757872-116758336 (-)
A/J no annotation
AKR/J no annotation
BALB/cJ no annotation
C3H/HeJ no annotation
C57BL/6NJ MGP_C57BL6NJ_G0000082
gene segment Chr12:120392582-120393046 (-)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0000061
gene segment Chr12:110843253-110843719 (-)
CBA/J no annotation
DBA/2J no annotation
FVB/NJ no annotation
LP/J MGP_LPJ_G0000065
gene segment Chr12:116761059-116761523 (-)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0000075
gene segment Chr12:115007751-115008215 (-)
PWK/PhJ no annotation
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    IGHV3-15, immunoglobulin heavy variable 3-15
  • Vertebrate Orthologs
    6
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    IGHV3-15, immunoglobulin heavy variable 3-15
  • Synonyms
    IGHV315, VH
  • Links
    NCBI Gene ID: 28448
    UniProt: A0A0B4J1V0

  • Chr Location
    14q32.33; chr14:106153622-106154163 (-)  GRCh38

  • Human Ortholog
    IGHV3-49, immunoglobulin heavy variable 3-49
  • Synonyms
    IGHV349, VH
  • Links
    NCBI Gene ID: 28423
    UniProt: A0A0A0MS15

  • Chr Location
    14q32.33; chr14:106556936-106557477 (-)  GRCh38

  • Human Ortholog
    IGHV3-73, immunoglobulin heavy variable 3-73
  • Synonyms
    IGHV373, VH
  • Links
    NCBI Gene ID: 28409
    UniProt: A0A0B4J1V6

  • Chr Location
    14q32.33; chr14:106802692-106803233 (-)  GRCh38

  • Human Ortholog
    IGHV3OR15-7, immunoglobulin heavy variable 3/OR15-7 (pseudogene)
  • Synonyms
    IGHV3/OR15-7
  • Links
    NCBI Gene ID: 28318

  • Chr Location
    15q11.1; chr15:19987656-19988117 (-)  GRCh38

Mutations,
Alleles, and
Phenotypes
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
Sequences &
Gene Models
less
  • All Sequences
  • RefSeq
  • UniProt
Representative SequencesLengthStrain/SpeciesFlank
genomic 629822 NCBI Gene Model | MGI Sequence Detail 465 C57BL/6J ±  kb
transcript OQ208870 GenBank | ENA | DDBJ | MGI Sequence Detail 471 C57BL/6  
polypeptide A0A075B5R2 UniProt | EBI | MGI Sequence Detail 120 Not Applicable  
For the selected sequence
Protein
Information
less
References
more
  • Summaries
    All 22
    Gene Ontology 1
  • Earliest
    J:10199 Shlomchik M, et al., Anti-DNA antibodies from autoimmune mice arise by clonal expansion and somatic mutation. J Exp Med. 1990 Jan 1;171(1):265-92
  • Latest
    J:292416 New JS, et al., Neonatal Exposure to Commensal-Bacteria-Derived Antigens Directs Polysaccharide-Specific B-1 B Cell Repertoire Development. Immunity. 2020 Jul 14;53(1):172-186.e6

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
06/12/2024
MGI 6.13
The Jackson Laboratory