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Trav16n Gene Detail
Summary
  • Symbol
    Trav16n
  • Name
    T cell receptor alpha variable 16n
  • Synonyms
    Gm16837
Location &
Maps
more
  • Sequence Map
    Chr14:53588547-53589078 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 14, 27.33 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    77 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_4439761
 gene segment Chr14:53588485-53589078 (+)
129S1/SvImJ ENSMUSG00200043840
 gene segment Chr14:42525449-42526042 (+)
A/J ENSMUSG00195036280
 gene segment Chr14:42320514-42321045 (+)
A/J ENSMUSG00195036307
 gene segment Chr14:42320452-42321045 (+)
AKR/J ENSMUSG00220036444
 gene segment Chr14:41530465-41531058 (-)
AKR/J ENSMUSG00220036419
 gene segment Chr14:41530465-41530996 (-)
BALB/cJ ENSMUSG00180053688
 gene segment Chr14:42373045-42373638 (+)
C3H/HeJ ENSMUSG00175049522
 gene segment Chr14:44055493-44056086 (+)
C57BL/6NJ no annotation
CAROLI/EiJ MGP_CAROLIEiJ_G0002226
 gene segment Chr14:45002994-45003586 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210049539
 gene segment Chr14:42298613-42299206 (+)
CBA/J ENSMUSG00210049528
 gene segment Chr14:42298675-42299206 (+)
DBA/2J ENSMUSG00185054115
 gene segment Chr14:47517485-47518078 (+)
FVB/NJ ENSMUSG00205041154
 gene segment Chr14:41643190-41643721 (+)
FVB/NJ ENSMUSG00205041180
 gene segment Chr14:41643128-41643721 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230053522
 gene segment Chr14:59891499-59892092 (+)
NOD/ShiLtJ ENSMUSG00190051733
 gene segment Chr14:42403552-42404145 (+)
NZO/HlLtJ ENSMUSG00225052494
 gene segment Chr14:50189556-50190149 (+)
PWK/PhJ ENSLUMG00010052458
 gene segment Chr14:41511747-41512278 (+)
PWK/PhJ ENSLUMG00010051415
 gene segment Chr14:41941735-41942328 (+)
SPRET/EiJ no annotation
WSB/EiJ no annotation



Homology
more
  • Human Ortholog
    TRAV14DV4, T cell receptor alpha variable 14/delta variable 4
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    TRAV14DV4, T cell receptor alpha variable 14/delta variable 4
  • Synonyms
    hADV14S1, TCRAV6S1-hDV104S1, TRAV14/DV4
  • Links
    NCBI Gene ID: 28669
    UniProt: A0A0A6YYC5

  • Chr Location
    14q11.2; chr14:21924063-21924651 (+)  GRCh38
  • Human Ortholog
    TRAV19, T cell receptor alpha variable 19
  • Synonyms
    TCRAV12S1, TCRAV19S1
  • Links
    NCBI Gene ID: 28664
    UniProt: A0A0A6YYK7

  • Chr Location
    14q11.2; chr14:22007512-22008181 (+)  GRCh38
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
Sequences &
Gene Models
less
  • All Sequences
    28
  • RefSeq
    1
  • UniProt
    2
Representative SequencesLengthStrain/SpeciesFlank
genomic 100126459 NCBI Gene Model | MGI Sequence Detail 532 C57BL/6J ±  kb
polypeptide A0A075B634 UniProt | EBI | MGI Sequence Detail 117 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    2 Sequences
  • InterPro Domains
    IPR007110 Immunoglobulin-like domain
    IPR036179 Immunoglobulin-like domain superfamily
    IPR013783 Immunoglobulin-like fold
    IPR013106 Immunoglobulin V-set domain
    IPR051287 T cell receptor variable region
References
more
  • Summaries
    All 9
    Gene Ontology 3
  • Earliest
    J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory