Gm16835 Gene Detail

Summary

• Symbol
  Gm16835
• Name
  predicted gene, 16835

• Feature Type
  lncRNA gene
• IDs
  MGI:4439759
  NCBI Gene: 102635192
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:119336377-119352486 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 62.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  117 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439759	lncRNA gene	Chr14:119336377-119352486 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015285	unclassified non-coding RNA gene	Chr14:116736660-116753242 (+)
A/J	MGP_AJ_G0015259	unclassified non-coding RNA gene	Chr14:112269335-112285460 (+)
AKR/J	MGP_AKRJ_G0015222	unclassified non-coding RNA gene	Chr14:115912102-115930793 (+)
BALB/cJ	MGP_BALBcJ_G0015223	unclassified non-coding RNA gene	Chr14:112822633-112838949 (+)
C3H/HeJ	MGP_C3HHeJ_G0015047	unclassified non-coding RNA gene	Chr14:115806337-115824597 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0015678	unclassified non-coding RNA gene	Chr14:121257352-121275309 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013419	unclassified non-coding RNA gene	Chr14:108300131-108315934 (+)
CAST/EiJ	MGP_CASTEiJ_G0014598	unclassified non-coding RNA gene	Chr14:113672440-113690527 (+)
CBA/J	MGP_CBAJ_G0015027	unclassified non-coding RNA gene	Chr14:125894769-125911897 (+)
DBA/2J	MGP_DBA2J_G0015121	unclassified non-coding RNA gene	Chr14:112185429-112202093 (+)
FVB/NJ	MGP_FVBNJ_G0015128	unclassified non-coding RNA gene	Chr14:110508818-110525152 (+)
LP/J	MGP_LPJ_G0015201	unclassified non-coding RNA gene	Chr14:117764487-117781948 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015154	unclassified non-coding RNA gene	Chr14:130958443-130976304 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0015717	unclassified non-coding RNA gene	Chr14:115405728-115421795 (+)
PWK/PhJ	MGP_PWKPhJ_G0014390	unclassified non-coding RNA gene	Chr14:109203576-109220693 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014177	unclassified non-coding RNA gene	Chr14:111649850-111666729 (+)
WSB/EiJ	MGP_WSBEiJ_G0014705	unclassified non-coding RNA gene	Chr14:116176018-116192880 (+)

Homology

• Gene Tree
  Gm16835
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16835
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  33
• RefSeq
  1

• Ensembl
  ENSMUSG00000087479 (Evidence)
• NCBI Gene
  102635192

Representative Sequences			Length	Strain/Species
genomic	102635192	NCBI Gene Model | MGI Sequence Detail	16110	C57BL/6J
transcript	NR_153786	RefSeq | MGI Sequence Detail	2809	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:67314 Roix J, et al., Molecular and functional mapping of the piebald deletion complex on mouse chromosome 14. Genetics. 2001 Feb;157(2):803-15

TSS for Gm16835:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127184	Chr14:119336861-119336877 (+)	492 bp
Tssr127185	Chr14:119336885-119336912 (+)	522 bp
Tssr127186	Chr14:119345882-119345885 (+)	9,507 bp