Gm16835 Gene Detail

Summary

• Symbol
  Gm16835
• Name
  predicted gene, 16835

• Feature Type
  lncRNA gene
• IDs
  MGI:4439759
  NCBI Gene: 102635192
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr14:119336377-119352486 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 62.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  553 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439759	lncRNA gene	Chr14:119336377-119360585 (+)
129S1/SvImJ	ENSMUSG00200025371	lncRNA gene	Chr14:108210081-108225769 (+)
A/J	ENSMUSG00195032363	lncRNA gene	Chr14:107965708-107981806 (+)
AKR/J	ENSMUSG00220008057	lncRNA gene	Chr14:107761698-107777791 (+)
BALB/cJ	ENSMUSG00180029659	lncRNA gene	Chr14:107457698-107473794 (+)
C3H/HeJ	ENSMUSG00175005929	lncRNA gene	Chr14:109398710-109414806 (+)
C57BL/6NJ	ENSMUSG00215028699	lncRNA gene	Chr14:107602518-107618628 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013419	unclassified non-coding RNA gene	Chr14:108300131-108315934 (+)
CAST/EiJ	ENSTCUG00005007516	lncRNA gene	Chr14:109039395-109055777 (+)
CBA/J	ENSMUSG00210027881	lncRNA gene	Chr14:108361647-108377744 (+)
DBA/2J	ENSMUSG00185014287	lncRNA gene	Chr14:113518123-113534219 (+)
FVB/NJ	ENSMUSG00205008421	lncRNA gene	Chr14:107078460-107094559 (+)
JF1/MsJ	ENSUMUG00000031040	lncRNA gene	Chr14:124549275-124565034 (+)
LP/J	ENSMUSG00230013279	lncRNA gene	Chr14:125501208-125517318 (+)
NOD/ShiLtJ	ENSMUSG00190027038	lncRNA gene	Chr14:108171975-108188070 (+)
NZO/HlLtJ	ENSMUSG00225029358	lncRNA gene	Chr14:115522490-115538058 (+)
PWK/PhJ	ENSLUMG00010031364	lncRNA gene	Chr14:107450336-107466087 (+)
SPRET/EiJ	ENSMSPG00010012690	lncRNA gene	Chr14:111671431-111692077 (+)
WSB/EiJ	ENSIUOG00005032005	lncRNA gene	Chr14:107391148-107407251 (+)

Homology

• Gene Tree
  Gm16835
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Gene trapped
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16835
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  119
• RefSeq
  1

• Ensembl
  ENSMUSG00000087479 (Evidence)
• NCBI Gene
  102635192

Representative Sequences			Length	Strain/Species
genomic	102635192	NCBI Gene Model | MGI Sequence Detail	16110	C57BL/6J
transcript	NR_153786	RefSeq | MGI Sequence Detail	2809	ZRU/MplStud

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 10

  Phenotypes 5
• Earliest
  J:67314 Roix J, et al., Molecular and functional mapping of the piebald deletion complex on mouse chromosome 14. Genetics. 2001 Feb;157(2):803-15

TSS for Gm16835:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr127184	Chr14:119336861-119336877 (+)	492 bp
Tssr127185	Chr14:119336885-119336912 (+)	522 bp
Tssr127186	Chr14:119345882-119345885 (+)	9,507 bp