Gm16833 Gene Detail

Summary

• Symbol
  Gm16833
• Name
  predicted gene, 16833

• Feature Type
  lncRNA gene
• IDs
  MGI:4439757
  NCBI Gene: 100579151
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr9:9236293-9260888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 2.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  141 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439757	lncRNA gene	Chr9:9236293-9260890 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0004605	antisense lncRNA gene	Chr9:6120538-6143646 (+)
A/J	MGP_AJ_G0004585	antisense lncRNA gene	Chr9:6244054-6269209 (+)
AKR/J	MGP_AKRJ_G0004569	antisense lncRNA gene	Chr9:6068988-6096858 (+)
BALB/cJ	MGP_BALBcJ_G0004570	antisense lncRNA gene	Chr9:5958318-5985499 (+)
C3H/HeJ	MGP_C3HHeJ_G0004519	antisense lncRNA gene	Chr9:6314757-6341816 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0004719	antisense lncRNA gene	Chr9:6345898-6371305 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004170	antisense lncRNA gene	Chr9:5367003-5390429 (+)
CAST/EiJ	MGP_CASTEiJ_G0004477	antisense lncRNA gene	Chr9:6250507-6276377 (+)
CBA/J	MGP_CBAJ_G0004513	antisense lncRNA gene	Chr9:6600239-6629249 (+)
DBA/2J	MGP_DBA2J_G0004528	antisense lncRNA gene	Chr9:6097222-6120851 (+)
FVB/NJ	MGP_FVBNJ_G0004545	antisense lncRNA gene	Chr9:5827422-5850457 (+)
LP/J	MGP_LPJ_G0004609	antisense lncRNA gene	Chr9:6141899-6169313 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0004534	antisense lncRNA gene	Chr9:7271768-7298610 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0004719	antisense lncRNA gene	Chr9:6083991-6107958 (+)
PWK/PhJ	MGP_PWKPhJ_G0004430	antisense lncRNA gene	Chr9:6165732-6190347 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0004371	antisense lncRNA gene	Chr9:6286853-6310579 (+)
WSB/EiJ	MGP_WSBEiJ_G0004518	antisense lncRNA gene	Chr9:6072949-6100688 (+)

Homology

• Gene Tree
  Gm16833
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085253 (Evidence)
• NCBI Gene
  100579151

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085253	Ensembl Gene Model | MGI Sequence Detail	24596	C57BL/6J
transcript	ENSMUST00000189204	Ensembl | MGI Sequence Detail	672	Not Applicable
polypeptide	Q3UNY1	UniProt | EBI | MGI Sequence Detail	67	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 7

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14