Gm16833 Gene Detail

Summary

• Symbol
  Gm16833
• Name
  predicted gene, 16833

• Feature Type
  lncRNA gene
• IDs
  MGI:4439757
  NCBI Gene: 100579151
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr9:9236293-9260888 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 2.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  905 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439757	lncRNA gene	Chr9:9236293-9260890 (+)
129S1/SvImJ	ENSMUSG00200023180	lncRNA gene	Chr9:6093700-6118239 (+)
A/J	ENSMUSG00195019957	lncRNA gene	Chr9:6004868-6029583 (+)
AKR/J	ENSMUSG00220018888	lncRNA gene	Chr9:5975363-5999964 (+)
BALB/cJ	ENSMUSG00180012021	lncRNA gene	Chr9:6137279-6162002 (+)
C3H/HeJ	ENSMUSG00175024148	lncRNA gene	Chr9:6061485-6086203 (+)
C57BL/6NJ	ENSMUSG00215006788	lncRNA gene	Chr9:6075450-6100166 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004170	antisense lncRNA gene	Chr9:5367003-5390429 (+)
CAST/EiJ	ENSTCUG00005007474	lncRNA gene	Chr9:6097338-6122033 (+)
CBA/J	ENSMUSG00210010988	lncRNA gene	Chr9:6122475-6147190 (+)
DBA/2J	ENSMUSG00185005378	lncRNA gene	Chr9:6205198-6229913 (+)
FVB/NJ	ENSMUSG00205007517	lncRNA gene	Chr9:6160522-6185237 (+)
JF1/MsJ	ENSUMUG00000009688	lncRNA gene	Chr9:6197278-6221854 (+)
LP/J	ENSMUSG00230004921	lncRNA gene	Chr9:6635017-6659554 (+)
NOD/ShiLtJ	ENSMUSG00190022484	lncRNA gene	Chr9:6113419-6138138 (+)
NZO/HlLtJ	ENSMUSG00225017177	lncRNA gene	Chr9:6544779-6569491 (+)
PWK/PhJ	ENSLUMG00010006627	lncRNA gene	Chr9:6180839-6205563 (+)
SPRET/EiJ	ENSMSPG00010005707	lncRNA gene	Chr9:6254709-6278744 (+)
WSB/EiJ	ENSIUOG00005007983	lncRNA gene	Chr9:5878265-5902978 (+)

Homology

• Gene Tree
  Gm16833
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Gene trapped
  1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000085253 (Evidence)
• NCBI Gene
  100579151

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000085253	Ensembl Gene Model | MGI Sequence Detail	24596	C57BL/6J
transcript	ENSMUST00000189204	Ensembl | MGI Sequence Detail	672	Not Applicable
polypeptide	Q3UNY1	UniProt | EBI | MGI Sequence Detail	67	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14