Traj25 Gene Detail

Summary

• Symbol
  Traj25
• Name
  T cell receptor alpha joining 25
• Synonyms
  Gm16823

• Feature Type
  gene segment
• IDs
  MGI:4439747
  NCBI Gene: 100124364
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54432272-54432328 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  42 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439747	gene segment	Chr14:54432272-54432328 (+)
129S1/SvImJ	ENSMUSG00200044192	gene segment	Chr14:43024478-43024534 (+)
A/J	ENSMUSG00195033593	gene segment	Chr14:43248752-43248808 (+)
AKR/J	ENSMUSG00220030035	gene segment	Chr14:42576691-42576747 (+)
BALB/cJ	ENSMUSG00180053471	gene segment	Chr14:42872517-42872573 (+)
C3H/HeJ	ENSMUSG00175051471	gene segment	Chr14:44554959-44555015 (+)
C57BL/6NJ	ENSMUSG00215049614	gene segment	Chr14:42754570-42754626 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002158	gene segment	Chr14:45627721-45627777 (+)
CAST/EiJ	ENSTCUG00005050928	gene segment	Chr14:44551312-44551368 (+)
CBA/J	ENSMUSG00210049260	gene segment	Chr14:43235521-43235577 (+)
DBA/2J	ENSMUSG00185056163	gene segment	Chr14:48276204-48276260 (+)
FVB/NJ	ENSMUSG00205043655	gene segment	Chr14:42618441-42618497 (+)
JF1/MsJ	ENSUMUG00000055074	gene segment	Chr14:59534782-59534838 (+)
LP/J	ENSMUSG00230052968	gene segment	Chr14:60390472-60390528 (+)
NOD/ShiLtJ	ENSMUSG00190046508	gene segment	Chr14:42979265-42979321 (+)
NZO/HlLtJ	ENSMUSG00225051875	gene segment	Chr14:50688561-50688617 (+)
PWK/PhJ	ENSLUMG00010048505	gene segment	Chr14:42458579-42458635 (+)
SPRET/EiJ	ENSMSPG00010046455	gene segment	Chr14:45849345-45849401 (+)
WSB/EiJ	ENSIUOG00005043444	gene segment	Chr14:42450315-42450371 (+)

Homology

• Gene Tree
  Traj25
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj25
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076904 (Evidence)
• NCBI Gene
  100124364

Representative Sequences			Length	Strain/Species
genomic	100124364	NCBI Gene Model | MGI Sequence Detail	57	C57BL/6J
polypeptide	A0A0G2JFP6	UniProt | EBI | MGI Sequence Detail	19	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj25:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125587	Chr14:54432154-54432167 (+)	-111 bp