Traj23 Gene Detail

Summary

• Symbol
  Traj23
• Name
  T cell receptor alpha joining 23
• Synonyms
  Gm16821

• Feature Type
  gene segment
• IDs
  MGI:4439745
  NCBI Gene: 100124366
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54433538-54433597 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439745	gene segment	Chr14:54433538-54433597 (+)
129S1/SvImJ	ENSMUSG00200044227	gene segment	Chr14:43025748-43025807 (+)
A/J	ENSMUSG00195033697	gene segment	Chr14:43250022-43250081 (+)
AKR/J	ENSMUSG00220030189	gene segment	Chr14:42577961-42578020 (+)
BALB/cJ	ENSMUSG00180053491	gene segment	Chr14:42873787-42873846 (+)
C3H/HeJ	ENSMUSG00175051506	gene segment	Chr14:44556229-44556288 (+)
C57BL/6NJ	ENSMUSG00215049652	gene segment	Chr14:42755836-42755895 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002160	gene segment	Chr14:45628990-45629049 (+)
CAST/EiJ	ENSTCUG00005050960	gene segment	Chr14:44552582-44552641 (+)
CBA/J	ENSMUSG00210049310	gene segment	Chr14:43236791-43236850 (+)
DBA/2J	ENSMUSG00185056173	gene segment	Chr14:48277474-48277533 (+)
FVB/NJ	ENSMUSG00205043838	gene segment	Chr14:42619711-42619770 (+)
JF1/MsJ	ENSUMUG00000055118	gene segment	Chr14:59536048-59536107 (+)
LP/J	ENSMUSG00230053174	gene segment	Chr14:60391742-60391801 (+)
NOD/ShiLtJ	ENSMUSG00190046624	gene segment	Chr14:42980535-42980594 (+)
NZO/HlLtJ	ENSMUSG00225051462	gene segment	Chr14:50689831-50689890 (+)
PWK/PhJ	ENSLUMG00010048613	gene segment	Chr14:42459849-42459908 (+)
SPRET/EiJ	ENSMSPG00010046490	gene segment	Chr14:45850615-45850674 (+)
WSB/EiJ	ENSIUOG00005043555	gene segment	Chr14:42451585-42451644 (+)

Homology

• Human Ortholog
  TRAJ23, T cell receptor alpha joining 23

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  TRAJ23, T cell receptor alpha joining 23
  
• Links
  HGNC:12052

  NCBI Gene ID: 28732

  
  
• Chr Location
  14q11.2; chr14:22520416-22520478 (+)  GRCh38

---

• MGI Vertebrate Homology
  Traj23 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: TRAJ23
• Gene Tree
  Traj23
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj23
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076906 (Evidence)
• NCBI Gene
  100124366

Representative Sequences			Length	Strain/Species
genomic	100124366	NCBI Gene Model | MGI Sequence Detail	60	C57BL/6J
polypeptide	A0A0G2JDS9	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj23:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125588	Chr14:54433494-54433521 (+)	-30 bp
Tssr125589	Chr14:54433525-54433533 (+)	-9 bp