Trbj2-7 Gene Detail

Summary

• Symbol
  Trbj2-7
• Name
  T cell receptor beta joining 2-7
• Synonyms
  Gm16807

• Feature Type
  gene segment
• IDs
  MGI:4439731
  NCBI Gene: 100125261
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:41520744-41520790 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  94 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439731	gene segment	Chr6:41520744-41520790 (+)
129S1/SvImJ	ENSMUSG00200046159	gene segment	Chr6:38578642-38578688 (+)
A/J	ENSMUSG00195043696	gene segment	Chr6:38548334-38548380 (+)
AKR/J	ENSMUSG00220009241	gene segment	Chr6:38149132-38149178 (+)
BALB/cJ	ENSMUSG00180047039	gene segment	Chr6:38676716-38676762 (+)
C3H/HeJ	ENSMUSG00175049595	gene segment	Chr6:38503830-38503876 (+)
C57BL/6NJ	ENSMUSG00215047736	gene segment	Chr6:38602515-38602561 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002191	gene segment	Chr6:36085375-36085421 (+)
CAST/EiJ	ENSTCUG00005036358	gene segment	Chr6:38008745-38008791 (+)
CBA/J	ENSMUSG00210052259	gene segment	Chr6:38555593-38555639 (+)
DBA/2J	ENSMUSG00185048887	gene segment	Chr6:38658086-38658132 (+)
FVB/NJ	ENSMUSG00205050860	gene segment	Chr6:38458468-38458514 (+)
JF1/MsJ	ENSUMUG00000026734	gene segment	Chr6:38201790-38201836 (+)
LP/J	ENSMUSG00230043563	gene segment	Chr6:39581769-39581815 (+)
NOD/ShiLtJ	ENSMUSG00190048828	gene segment	Chr6:38447549-38447595 (+)
NZO/HlLtJ	ENSMUSG00225020480	gene segment	Chr6:41564405-41564451 (+)
PWK/PhJ	ENSLUMG00010046055	gene segment	Chr6:38033603-38033649 (+)
SPRET/EiJ	ENSMSPG00010031933	gene segment	Chr6:38755623-38755669 (+)
WSB/EiJ	ENSIUOG00005033115	gene segment	Chr6:38711510-38711556 (+)

Homology

• Gene Tree
  Trbj2-7
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076497 (Evidence)
• NCBI Gene
  100125261

Representative Sequences			Length	Strain/Species
genomic	100125261	NCBI Gene Model | MGI Sequence Detail	47	C57BL/6J
polypeptide	A0A0A6YXH6	UniProt | EBI | MGI Sequence Detail	16	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 7
• Earliest
  J:7500 Malissen M, et al., Mouse T cell antigen receptor: structure and organization of constant and joining gene segments encoding the beta polypeptide. Cell. 1984 Jul;37(3):1101-10
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbj2-7:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55942	Chr6:41520604-41520637 (+)	-123 bp
Tssr55943	Chr6:41520736-41520761 (+)	5 bp