Trbj2-4 Gene Detail

Summary

• Symbol
  Trbj2-4
• Name
  T cell receptor beta joining 2-4
• Synonyms
  Gm16806

• Feature Type
  gene segment
• IDs
  MGI:4439730
  NCBI Gene: 100125258
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:41520296-41520344 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  88 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439730	gene segment	Chr6:41520296-41520344 (+)
129S1/SvImJ	ENSMUSG00200046140	gene segment	Chr6:38578194-38578242 (+)
A/J	ENSMUSG00195043671	gene segment	Chr6:38547886-38547934 (+)
AKR/J	ENSMUSG00220009234	gene segment	Chr6:38148684-38148732 (+)
BALB/cJ	ENSMUSG00180047009	gene segment	Chr6:38676268-38676316 (+)
C3H/HeJ	ENSMUSG00175049579	gene segment	Chr6:38503382-38503430 (+)
C57BL/6NJ	ENSMUSG00215047721	gene segment	Chr6:38602067-38602115 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002189	gene segment	Chr6:36084926-36084974 (+)
CAST/EiJ	ENSTCUG00005036333	gene segment	Chr6:38008297-38008345 (+)
CBA/J	ENSMUSG00210052257	gene segment	Chr6:38555145-38555193 (+)
DBA/2J	ENSMUSG00185048863	gene segment	Chr6:38657638-38657686 (+)
FVB/NJ	ENSMUSG00205050807	gene segment	Chr6:38458020-38458068 (+)
JF1/MsJ	ENSUMUG00000026684	gene segment	Chr6:38201342-38201390 (+)
LP/J	ENSMUSG00230043537	gene segment	Chr6:39581321-39581369 (+)
NOD/ShiLtJ	ENSMUSG00190048807	gene segment	Chr6:38447101-38447149 (+)
NZO/HlLtJ	ENSMUSG00225020426	gene segment	Chr6:41563957-41564005 (+)
PWK/PhJ	ENSLUMG00010046032	gene segment	Chr6:38033155-38033203 (+)
SPRET/EiJ	ENSMSPG00010031909	gene segment	Chr6:38755183-38755231 (+)
WSB/EiJ	ENSIUOG00005033091	gene segment	Chr6:38711062-38711110 (+)

Homology

• Gene Tree
  Trbj2-4
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076495 (Evidence)
• NCBI Gene
  100125258

Representative Sequences			Length	Strain/Species
genomic	100125258	NCBI Gene Model | MGI Sequence Detail	49	C57BL/6J
polypeptide	A0A0B4J1P9	UniProt | EBI | MGI Sequence Detail	16	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 7
• Earliest
  J:7500 Malissen M, et al., Mouse T cell antigen receptor: structure and organization of constant and joining gene segments encoding the beta polypeptide. Cell. 1984 Jul;37(3):1101-10
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbj2-4:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55934	Chr6:41520256-41520267 (+)	-34 bp
Tssr55935	Chr6:41520273-41520285 (+)	-17 bp
Tssr55936	Chr6:41520288-41520313 (+)	5 bp