Trbj2-2 Gene Detail

Summary

• Symbol
  Trbj2-2
• Name
  T cell receptor beta joining 2-2
• Synonyms
  Gm16805

• Feature Type
  gene segment
• IDs
  MGI:4439729
  NCBI Gene: 100125256
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:41519891-41519941 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  87 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439729	gene segment	Chr6:41519891-41519941 (+)
129S1/SvImJ	ENSMUSG00200048101	gene segment	Chr6:38577789-38577839 (+)
A/J	ENSMUSG00195042996	gene segment	Chr6:38547481-38547531 (+)
AKR/J	ENSMUSG00220009875	gene segment	Chr6:38148279-38148329 (+)
BALB/cJ	ENSMUSG00180048115	gene segment	Chr6:38675863-38675913 (+)
C3H/HeJ	ENSMUSG00175050861	gene segment	Chr6:38502977-38503027 (+)
C57BL/6NJ	ENSMUSG00215049336	gene segment	Chr6:38601662-38601712 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002187	gene segment	Chr6:36084508-36084558 (+)
CAST/EiJ	ENSTCUG00005037244	gene segment	Chr6:38007892-38007942 (+)
CBA/J	ENSMUSG00210052238	gene segment	Chr6:38554740-38554790 (+)
DBA/2J	ENSMUSG00185049113	gene segment	Chr6:38657233-38657283 (+)
FVB/NJ	ENSMUSG00205050590	gene segment	Chr6:38457615-38457665 (+)
JF1/MsJ	ENSUMUG00000027770	gene segment	Chr6:38200937-38200987 (+)
LP/J	ENSMUSG00230043252	gene segment	Chr6:39580916-39580966 (+)
NOD/ShiLtJ	ENSMUSG00190050686	gene segment	Chr6:38446696-38446746 (+)
NZO/HlLtJ	ENSMUSG00225019963	gene segment	Chr6:41563552-41563602 (+)
PWK/PhJ	ENSLUMG00010048311	gene segment	Chr6:38032750-38032800 (+)
SPRET/EiJ	ENSMSPG00010035224	gene segment	Chr6:38754778-38754828 (+)
WSB/EiJ	ENSIUOG00005035535	gene segment	Chr6:38710657-38710707 (+)

Homology

• Gene Tree
  Trbj2-2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076493 (Evidence)
• NCBI Gene
  100125256

Representative Sequences			Length	Strain/Species
genomic	100125256	NCBI Gene Model | MGI Sequence Detail	51	C57BL/6J
polypeptide	A0A0A6YX08	UniProt | EBI | MGI Sequence Detail	17	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• PDB
  4MVB, 4MXQ, 4N0C, 4N5E

References

• Summaries
  All 8
• Earliest
  J:7500 Malissen M, et al., Mouse T cell antigen receptor: structure and organization of constant and joining gene segments encoding the beta polypeptide. Cell. 1984 Jul;37(3):1101-10
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbj2-2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55930	Chr6:41519883-41519906 (+)	4 bp