Trbd2 Gene Detail

Summary

• Symbol
  Trbd2
• Name
  T cell receptor beta, D region 2
• Synonyms
  Gm16803, Tcrb-D2

• Feature Type
  gene segment
• IDs
  MGI:4439727
  NCBI Gene: 100125247
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr6:41519097-41519110 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.70 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  86 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439727	gene segment	Chr6:41519097-41519110 (+)
129S1/SvImJ	ENSMUSG00200048063	gene segment	Chr6:38576995-38577008 (+)
A/J	ENSMUSG00195042957	gene segment	Chr6:38546687-38546700 (+)
AKR/J	ENSMUSG00220009864	gene segment	Chr6:38147485-38147498 (+)
BALB/cJ	ENSMUSG00180048087	gene segment	Chr6:38675069-38675082 (+)
C3H/HeJ	ENSMUSG00175050843	gene segment	Chr6:38502183-38502196 (+)
C57BL/6NJ	ENSMUSG00215049322	gene segment	Chr6:38600868-38600881 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002125	gene segment	Chr6:36083706-36083719 (+)
CAST/EiJ	ENSTCUG00005037285	gene segment	Chr6:38007095-38007109 (+)
CBA/J	ENSMUSG00210052229	gene segment	Chr6:38553946-38553959 (+)
DBA/2J	ENSMUSG00185049074	gene segment	Chr6:38656439-38656452 (+)
FVB/NJ	ENSMUSG00205050562	gene segment	Chr6:38456821-38456834 (+)
JF1/MsJ	ENSUMUG00000027845	gene segment	Chr6:38200140-38200154 (+)
LP/J	ENSMUSG00230043689	gene segment	Chr6:39580122-39580135 (+)
NOD/ShiLtJ	ENSMUSG00190050644	gene segment	Chr6:38445902-38445915 (+)
NZO/HlLtJ	ENSMUSG00225020701	gene segment	Chr6:41562758-41562771 (+)
PWK/PhJ	ENSLUMG00010048272	gene segment	Chr6:38031956-38031969 (+)
SPRET/EiJ	ENSMSPG00010035204	gene segment	Chr6:38753986-38753999 (+)
WSB/EiJ	ENSIUOG00005035581	gene segment	Chr6:38709861-38709875 (+)

Homology

• Gene Tree
  Trbd2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000094569 (Evidence)
• NCBI Gene
  100125247

Representative Sequences			Length	Strain/Species
genomic	100125247	NCBI Gene Model | MGI Sequence Detail	14	C57BL/6J

References

• Summaries
  All 7
• Earliest
  J:7596 Siu G, et al., The structure, rearrangement and expression of D beta gene segments of the murine T-cell antigen receptor. Nature. 1984 Sep 27-Oct 3;311(5984):344-50
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbd2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55922	Chr6:41518824-41518837 (+)	-266 bp
Tssr55923	Chr6:41518878-41518888 (+)	-214 bp
Tssr55924	Chr6:41518979-41519013 (+)	-101 bp