Traj58 Gene Detail

Summary

• Symbol
  Traj58
• Name
  T cell receptor alpha joining 58
• Synonyms
  Gm16771

• Feature Type
  gene segment
• IDs
  MGI:4439695
  NCBI Gene: 100124294
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54394737-54394799 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  15 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439695	gene segment	Chr14:54394737-54394799 (+)
129S1/SvImJ	ENSMUSG00200045183	gene segment	Chr14:42987068-42987130 (+)
A/J	ENSMUSG00195033414	gene segment	Chr14:43211335-43211397 (+)
AKR/J	ENSMUSG00220030628	gene segment	Chr14:42539259-42539321 (+)
BALB/cJ	ENSMUSG00180053006	gene segment	Chr14:42835103-42835165 (+)
C3H/HeJ	ENSMUSG00175050219	gene segment	Chr14:44517550-44517612 (+)
C57BL/6NJ	ENSMUSG00215049078	gene segment	Chr14:42717030-42717092 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002131	gene segment	Chr14:45590528-45590590 (+)
CAST/EiJ	ENSTCUG00005050804	gene segment	Chr14:44513710-44513772 (+)
CBA/J	ENSMUSG00210048744	gene segment	Chr14:43198104-43198166 (+)
DBA/2J	ENSMUSG00185054570	gene segment	Chr14:48238756-48238818 (+)
FVB/NJ	ENSMUSG00205047190	gene segment	Chr14:42581015-42581077 (+)
JF1/MsJ	ENSUMUG00000051580	gene segment	Chr14:59497226-59497288 (+)
LP/J	ENSMUSG00230052898	gene segment	Chr14:60353063-60353125 (+)
NOD/ShiLtJ	ENSMUSG00190048047	gene segment	Chr14:42941835-42941897 (+)
NZO/HlLtJ	ENSMUSG00225051665	gene segment	Chr14:50651149-50651211 (+)
PWK/PhJ	ENSLUMG00010048429	gene segment	Chr14:42421168-42421230 (+)
SPRET/EiJ	ENSMSPG00010049217	gene segment	Chr14:45811858-45811920 (+)
WSB/EiJ	ENSIUOG00005043095	gene segment	Chr14:42412835-42412897 (+)

Homology

• Gene Tree
  Traj58
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj58
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076875 (Evidence)
• NCBI Gene
  100124294

Representative Sequences			Length	Strain/Species
genomic	100124294	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
polypeptide	A0A0G2JFA3	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• PDB
  4MVB, 4MXQ, 4N0C, 4N5E

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj58:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125546	Chr14:54394724-54394731 (+)	-9 bp