Traj56 Gene Detail

Summary

• Symbol
  Traj56
• Name
  T cell receptor alpha joining 56
• Synonyms
  Gm16769

• Feature Type
  gene segment
• IDs
  MGI:4439693
  NCBI Gene: 100124296
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54396720-54396782 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.67 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  19 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439693	gene segment	Chr14:54396720-54396782 (+)
129S1/SvImJ	ENSMUSG00200045106	gene segment	Chr14:42989043-42989105 (+)
A/J	ENSMUSG00195033326	gene segment	Chr14:43213312-43213374 (+)
AKR/J	ENSMUSG00220030461	gene segment	Chr14:42541236-42541298 (+)
BALB/cJ	ENSMUSG00180052973	gene segment	Chr14:42837082-42837144 (+)
C3H/HeJ	ENSMUSG00175050122	gene segment	Chr14:44519527-44519589 (+)
C57BL/6NJ	ENSMUSG00215049011	gene segment	Chr14:42719013-42719075 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002133	gene segment	Chr14:45592530-45592592 (+)
CAST/EiJ	ENSTCUG00005050786	gene segment	Chr14:44515745-44515807 (+)
CBA/J	ENSMUSG00210048692	gene segment	Chr14:43200083-43200145 (+)
DBA/2J	ENSMUSG00185054513	gene segment	Chr14:48240729-48240791 (+)
FVB/NJ	ENSMUSG00205047072	gene segment	Chr14:42582985-42583047 (+)
JF1/MsJ	ENSUMUG00000051441	gene segment	Chr14:59499205-59499267 (+)
LP/J	ENSMUSG00230052966	gene segment	Chr14:60355040-60355102 (+)
NOD/ShiLtJ	ENSMUSG00190047925	gene segment	Chr14:42943805-42943867 (+)
NZO/HlLtJ	ENSMUSG00225051867	gene segment	Chr14:50653126-50653188 (+)
PWK/PhJ	ENSLUMG00010048324	gene segment	Chr14:42423141-42423203 (+)
SPRET/EiJ	ENSMSPG00010049166	gene segment	Chr14:45813828-45813890 (+)
WSB/EiJ	ENSIUOG00005043004	gene segment	Chr14:42414813-42414875 (+)

Homology

• Gene Tree
  Traj56
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj56
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076877 (Evidence)
• NCBI Gene
  100124296

Representative Sequences			Length	Strain/Species
genomic	100124296	NCBI Gene Model | MGI Sequence Detail	63	C57BL/6J
polypeptide	A0A0G2JDZ0	UniProt | EBI | MGI Sequence Detail	21	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj56:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125548	Chr14:54396485-54396492 (+)	-231 bp