Gm16759 Gene Detail

Summary

• Symbol
  Gm16759
• Name
  predicted gene, 16759
• Synonyms
  lnc-Smad3

• Feature Type
  lncRNA gene
• IDs
  MGI:4439683
  NCBI Gene: 102639582
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr9:63306646-63441286 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 34.07 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  2610 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439683	lncRNA gene	Chr9:63305883-63475973 (+)
129S1/SvImJ	ENSMUSG00200036378	lncRNA gene	Chr9:60407093-60576772 (+)
A/J	ENSMUSG00195042046	lncRNA gene	Chr9:60115330-60284771 (+)
AKR/J	ENSMUSG00220031919	lncRNA gene	Chr9:60264739-60434278 (+)
BALB/cJ	ENSMUSG00180020579	lncRNA gene	Chr9:60255545-60425648 (+)
C3H/HeJ	ENSMUSG00175022537	lncRNA gene	Chr9:60248443-60417875 (+)
C57BL/6NJ	ENSMUSG00215036274	lncRNA gene	Chr9:60242685-60412785 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013860	unclassified non-coding RNA gene	Chr9:60565661-60734049 (+)
CAST/EiJ	ENSTCUG00005021959	lncRNA gene	Chr9:60160960-60328335 (+)
CBA/J	ENSMUSG00210043793	lncRNA gene	Chr9:60338366-60508477 (+)
DBA/2J	ENSMUSG00185043584	lncRNA gene	Chr9:60361561-60531680 (+)
FVB/NJ	ENSMUSG00205044862	lncRNA gene	Chr9:60685759-60855200 (+)
JF1/MsJ	ENSUMUG00000051711	lncRNA gene	Chr9:60410067-60578857 (+)
LP/J	ENSMUSG00230039565	lncRNA gene	Chr9:60606324-60775991 (+)
NOD/ShiLtJ	ENSMUSG00190045729	lncRNA gene	Chr9:60445377-60614805 (+)
NZO/HlLtJ	ENSMUSG00225046710	lncRNA gene	Chr9:60671223-60840652 (+)
PWK/PhJ	ENSLUMG00010039307	lncRNA gene	Chr9:60379930-60548808 (+)
SPRET/EiJ	ENSMSPG00010021539	lncRNA gene	Chr9:61446578-61613498 (+)
WSB/EiJ	ENSIUOG00005040731	lncRNA gene	Chr9:59852679-60022306 (+)

Homology

• Gene Tree
  Gm16759
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Gm16759
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  35
• RefSeq
  4

• Ensembl
  ENSMUSG00000086539 (Evidence)
• NCBI Gene
  102639582

Representative Sequences			Length	Strain/Species
genomic	102639582	NCBI Gene Model | MGI Sequence Detail	134641	C57BL/6J
transcript	AK039256	GenBank | ENA | DDBJ | MGI Sequence Detail	1386	C57BL/6J

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 8

  Phenotypes 2
• Earliest
  J:345539 Xia M, et al., Ash1l and lnc-Smad3 coordinate Smad3 locus accessibility to modulate iTreg polarization and T cell autoimmunity. Nat Commun. 2017 Jun 09;8:15818

TSS for Gm16759:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr2906	Chr9:63408007-63408011 (+)	101,363 bp