Gm16754 Gene Detail

Summary

• Symbol
  Gm16754
• Name
  predicted gene, 16754

• Feature Type
  lncRNA gene
• IDs
  MGI:4439678
  NCBI Gene: 100503569
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr9:21136416-21144504 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 9, 7.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  261 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439678	lncRNA gene	Chr9:21136416-21144504 (+)
129S1/SvImJ	ENSMUSG00200050112	lncRNA gene	Chr9:18090881-18098675 (+)
A/J	ENSMUSG00195040617	lncRNA gene	Chr9:17927433-17935239 (+)
AKR/J	ENSMUSG00220034902	lncRNA gene	Chr9:17929882-17937677 (+)
BALB/cJ	ENSMUSG00180044657	lncRNA gene	Chr9:18061701-18069496 (+)
C3H/HeJ	ENSMUSG00175044363	lncRNA gene	Chr9:18024319-18032114 (+)
C57BL/6NJ	ENSMUSG00215038440	lncRNA gene	Chr9:18021576-18029371 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013851	unclassified non-coding RNA gene	Chr9:17236616-17244611 (+)
CAST/EiJ	ENSTCUG00005035687	lncRNA gene	Chr9:18054776-18062581 (+)
CBA/J	ENSMUSG00210044734	lncRNA gene	Chr9:18005230-18013027 (+)
DBA/2J	ENSMUSG00185027093	lncRNA gene	Chr9:18120538-18128338 (+)
FVB/NJ	ENSMUSG00205044872	lncRNA gene	Chr9:18353729-18361450 (+)
JF1/MsJ	ENSUMUG00000050519	lncRNA gene	Chr9:18229238-18236979 (+)
LP/J	ENSMUSG00230044725	lncRNA gene	Chr9:18511744-18519460 (+)
NOD/ShiLtJ	ENSMUSG00190043781	lncRNA gene	Chr9:18045527-18053247 (+)
NZO/HlLtJ	ENSMUSG00225051336	lncRNA gene	Chr9:18462589-18470383 (+)
PWK/PhJ	ENSLUMG00010048075	lncRNA gene	Chr9:18119257-18126997 (+)
SPRET/EiJ	ENSMSPG00010027019	lncRNA gene	Chr9:18348645-18356265 (+)
WSB/EiJ	ENSIUOG00005047370	lncRNA gene	Chr9:17590600-17598324 (+)

Homology

• Gene Tree
  Gm16754
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  18
• Gene trapped
  18
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  4

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  43
• RefSeq
  5

• Ensembl
  ENSMUSG00000097439 (Evidence)
• NCBI Gene
  100503569

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097439	Ensembl Gene Model | MGI Sequence Detail	8089	C57BL/6J
transcript	ENSMUST00000181222	Ensembl | MGI Sequence Detail	2302	Not Applicable

Molecular
Reagents

• All nucleic 4

  cDNA 4

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:142754 Hansen GM, et al., Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Genome Res. 2008 Oct;18(10):1670-9

TSS for Gm16754:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr83977	Chr9:21136659-21136684 (+)	256 bp
Tssr83978	Chr9:21136692-21136727 (+)	294 bp