Gm16740 Gene Detail

Summary

• Symbol
  Gm16740
• Name
  predicted gene, 16740

• Feature Type
  lncRNA gene
• IDs
  MGI:4439664
  NCBI Gene: 100504029
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr3:95124768-95133969 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 40.74 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  240 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439664	lncRNA gene	Chr3:95124639-95133971 (+)
129S1/SvImJ	ENSMUSG00200045540	lncRNA gene	Chr3:91781716-91790967 (+)
A/J	ENSMUSG00195049434	lncRNA gene	Chr3:92106743-92115988 (+)
AKR/J	ENSMUSG00220051291	lncRNA gene	Chr3:90493778-90503019 (+)
BALB/cJ	ENSMUSG00180041681	lncRNA gene	Chr3:92106461-92115703 (+)
C3H/HeJ	ENSMUSG00175030983	lncRNA gene	Chr3:91750430-91759675 (+)
C57BL/6NJ	ENSMUSG00215036104	lncRNA gene	Chr3:92469248-92478485 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0003402	antisense lncRNA gene	Chr3:89321148-89330231 (+)
CAST/EiJ	ENSTCUG00005049275	lncRNA gene	Chr3:92313611-92322992 (+)
CBA/J	ENSMUSG00210051292	lncRNA gene	Chr3:92287900-92297145 (+)
DBA/2J	ENSMUSG00185046445	lncRNA gene	Chr3:92704569-92713810 (+)
FVB/NJ	ENSMUSG00205050695	lncRNA gene	Chr3:91404236-91413473 (+)
JF1/MsJ	ENSUMUG00000053415	lncRNA gene	Chr3:91606316-91615583 (+)
LP/J	ENSMUSG00230045501	lncRNA gene	Chr3:94645182-94654425 (+)
NOD/ShiLtJ	ENSMUSG00190050131	lncRNA gene	Chr3:92798690-92807946 (+)
NZO/HlLtJ	ENSMUSG00225012502	lncRNA gene	Chr3:97067985-97077222 (+)
PWK/PhJ	ENSLUMG00010052870	lncRNA gene	Chr3:91585996-91595259 (+)
SPRET/EiJ	ENSMSPG00010045448	lncRNA gene	Chr3:91891227-91900337 (+)
WSB/EiJ	ENSIUOG00005033827	lncRNA gene	Chr3:92227025-92236292 (+)

Homology

• Gene Tree
  Gm16740
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  10 phenotype references
  

• All Mutations and Alleles
  63
• Chemically induced (other)
  1
• Gene trapped
  61
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16740
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  27
• RefSeq
  1

• Ensembl
  ENSMUSG00000097167 (Evidence)
• NCBI Gene
  100504029

Representative Sequences			Length	Strain/Species
genomic	100504029	NCBI Gene Model | MGI Sequence Detail	9202	C57BL/6J
transcript	NR_108026	RefSeq | MGI Sequence Detail	956	ZRU/MplStud

References

• Summaries
  All 14

  Diseases 1

  Phenotypes 10
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm16740:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr30503	Chr3:95124728-95124795 (+)	-6 bp
Tssr30504	Chr3:95125311-95125370 (+)	573 bp
Tssr30505	Chr3:95125381-95125393 (+)	619 bp