Gm16701 Gene Detail

Summary

• Symbol
  Gm16701
• Name
  predicted gene, 16701
• Synonyms
  ln-CR2

• Feature Type
  lncRNA gene
• IDs
  MGI:4439625
  NCBI Gene: 100503962
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:166801592-166827299 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 74.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  763 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439625	lncRNA gene	Chr1:166793634-166829834 (-)
129S1/SvImJ	ENSMUSG00200046786	lncRNA gene	Chr1:164306418-164332126 (-)
A/J	ENSMUSG00195049365	lncRNA gene	Chr1:163613298-163639004 (-)
AKR/J	ENSMUSG00220014615	lncRNA gene	Chr1:163336873-163362580 (-)
BALB/cJ	ENSMUSG00180045416	lncRNA gene	Chr1:163858586-163884286 (-)
C3H/HeJ	ENSMUSG00175047619	lncRNA gene	Chr1:163962088-163987794 (-)
C57BL/6NJ	ENSMUSG00215045505	lncRNA gene	Chr1:163740222-163765926 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004556	lincRNA gene	Chr1:157339750-157359129 (-)
CAST/EiJ	ENSTCUG00005021273	lncRNA gene	Chr1:162324284-162343773 (-)
CBA/J	ENSMUSG00210043267	lncRNA gene	Chr1:163829809-163855506 (-)
DBA/2J	ENSMUSG00185012022	lncRNA gene	Chr1:168052930-168072169 (-)
FVB/NJ	ENSMUSG00205040955	lncRNA gene	Chr1:162820290-162841970 (-)
JF1/MsJ	ENSUMUG00000012137	lncRNA gene	Chr1:167207705-167227019 (-)
LP/J	ENSMUSG00230027299	lncRNA gene	Chr1:167693541-167719241 (-)
NOD/ShiLtJ	ENSMUSG00190042842	lncRNA gene	Chr1:163623432-163649137 (-)
NZO/HlLtJ	ENSMUSG00225005133	lncRNA gene	Chr1:171279372-171305072 (-)
PWK/PhJ	ENSLUMG00010044949	lncRNA gene	Chr1:162581556-162600700 (-)
SPRET/EiJ	ENSMSPG00010049630	lncRNA gene	Chr1:166077575-166097142 (-)
WSB/EiJ	ENSIUOG00005039693	lncRNA gene	Chr1:163055560-163074903 (-)

Homology

• Gene Tree
  Gm16701
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm16701
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  607
• Tissues
  10
• cDNA Data
  2
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  60
• RefSeq
  1

• Ensembl
  ENSMUSG00000102548 (Evidence)
• NCBI Gene
  100503962

Representative Sequences			Length	Strain/Species
genomic	100503962	NCBI Gene Model | MGI Sequence Detail	25708	C57BL/6J
transcript	NR_037988	RefSeq | MGI Sequence Detail	936	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 2

  Other 1

References

• Summaries
  All 9

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:339532 Li J, et al., Integrative genomic analysis of early neurogenesis reveals a temporal genetic program for differentiation and specification of preplate and Cajal-Retzius neurons. PLoS Genet. 2021 Mar;17(3):e1009355