Traj12 Gene Detail

Summary

• Symbol
  Traj12
• Name
  T cell receptor alpha joining 12
• Synonyms
  Gm16659

• Feature Type
  gene segment
• IDs
  MGI:4439583
  NCBI Gene: 100124391
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr14:54444010-54444067 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439583	gene segment	Chr14:54444009-54444067 (+)
129S1/SvImJ	ENSMUSG00200044029	gene segment	Chr14:43036236-43036293 (+)
A/J	ENSMUSG00195037401	gene segment	Chr14:43260511-43260568 (+)
AKR/J	ENSMUSG00220035757	gene segment	Chr14:42588451-42588508 (+)
BALB/cJ	ENSMUSG00180052310	gene segment	Chr14:42884274-42884331 (+)
C3H/HeJ	ENSMUSG00175052335	gene segment	Chr14:44566715-44566772 (+)
C57BL/6NJ	ENSMUSG00215050251	gene segment	Chr14:42766310-42766367 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002170	gene segment	Chr14:45639444-45639501 (+)
CAST/EiJ	ENSTCUG00005050162	gene segment	Chr14:44562838-44562895 (+)
CBA/J	ENSMUSG00210048526	gene segment	Chr14:43247279-43247336 (+)
DBA/2J	ENSMUSG00185054939	gene segment	Chr14:48287969-48288026 (+)
FVB/NJ	ENSMUSG00205048217	gene segment	Chr14:42630207-42630264 (+)
JF1/MsJ	ENSUMUG00000055186	gene segment	Chr14:59546503-59546560 (+)
LP/J	ENSMUSG00230053093	gene segment	Chr14:60402230-60402287 (+)
NOD/ShiLtJ	ENSMUSG00190046936	gene segment	Chr14:42991029-42991086 (+)
NZO/HlLtJ	ENSMUSG00225051257	gene segment	Chr14:50700319-50700376 (+)
PWK/PhJ	ENSLUMG00010052413	gene segment	Chr14:42470337-42470394 (+)
SPRET/EiJ	ENSMSPG00010048634	gene segment	Chr14:45861083-45861140 (+)
WSB/EiJ	ENSIUOG00005046054	gene segment	Chr14:42462056-42462113 (+)

Homology

• Gene Tree
  Traj12
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj12
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076917 (Evidence)
• NCBI Gene
  100124391

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000076917	Ensembl Gene Model | MGI Sequence Detail	58	C57BL/6J
transcript	ENSMUST00000103729	Ensembl | MGI Sequence Detail	58	Not Applicable
polypeptide	ENSMUSP00000142357	Ensembl | MGI Sequence Detail	19	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61