Traj19 Gene Detail

Summary

• Symbol
  Traj19
• Name
  T cell receptor alpha joining 19
• Synonyms
  Gm16655

• Feature Type
  gene segment
• IDs
  MGI:4439579
  NCBI Gene: 100124370
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54437843-54437903 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  25 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439579	gene segment	Chr14:54437843-54437903 (+)
129S1/SvImJ	ENSMUSG00200044049	gene segment	Chr14:43030054-43030114 (+)
A/J	ENSMUSG00195037435	gene segment	Chr14:43254328-43254388 (+)
AKR/J	ENSMUSG00220035786	gene segment	Chr14:42582269-42582329 (+)
BALB/cJ	ENSMUSG00180052323	gene segment	Chr14:42878093-42878153 (+)
C3H/HeJ	ENSMUSG00175052351	gene segment	Chr14:44560533-44560593 (+)
C57BL/6NJ	ENSMUSG00215050263	gene segment	Chr14:42760143-42760203 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002164	gene segment	Chr14:45633231-45633291 (+)
CAST/EiJ	ENSTCUG00005050168	gene segment	Chr14:44556666-44556726 (+)
CBA/J	ENSMUSG00210048541	gene segment	Chr14:43241097-43241157 (+)
DBA/2J	ENSMUSG00185054962	gene segment	Chr14:48281786-48281846 (+)
FVB/NJ	ENSMUSG00205048239	gene segment	Chr14:42624023-42624083 (+)
JF1/MsJ	ENSUMUG00000055205	gene segment	Chr14:59540335-59540395 (+)
LP/J	ENSMUSG00230053122	gene segment	Chr14:60396048-60396108 (+)
NOD/ShiLtJ	ENSMUSG00190046979	gene segment	Chr14:42984845-42984905 (+)
NZO/HlLtJ	ENSMUSG00225051344	gene segment	Chr14:50694137-50694197 (+)
PWK/PhJ	ENSLUMG00010052428	gene segment	Chr14:42464155-42464215 (+)
SPRET/EiJ	ENSMSPG00010048674	gene segment	Chr14:45854921-45854981 (+)
WSB/EiJ	ENSIUOG00005046087	gene segment	Chr14:42455884-42455944 (+)

Homology

• Gene Tree
  Traj19
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj19
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076910 (Evidence)
• NCBI Gene
  100124370

Representative Sequences			Length	Strain/Species
genomic	100124370	NCBI Gene Model | MGI Sequence Detail	61	C57BL/6J
polypeptide	A0A0G2JDX6	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj19:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125590	Chr14:54437429-54437440 (+)	-408 bp