Traj11 Gene Detail

Summary

• Symbol
  Traj11
• Name
  T cell receptor alpha joining 11
• Synonyms
  Gm16654

• Feature Type
  gene segment
• IDs
  MGI:4439578
  NCBI Gene: 100124392
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr14:54444596-54444654 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  44 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439578	gene segment	Chr14:54444596-54444654 (+)
129S1/SvImJ	ENSMUSG00200045491	gene segment	Chr14:43036819-43036877 (+)
A/J	ENSMUSG00195033851	gene segment	Chr14:43261100-43261158 (+)
AKR/J	ENSMUSG00220031630	gene segment	Chr14:42589040-42589098 (+)
BALB/cJ	ENSMUSG00180052108	gene segment	Chr14:42884863-42884921 (+)
C3H/HeJ	ENSMUSG00175052418	gene segment	Chr14:44567302-44567360 (+)
C57BL/6NJ	ENSMUSG00215050169	gene segment	Chr14:42766896-42766954 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002171	gene segment	Chr14:45640035-45640093 (+)
CAST/EiJ	ENSTCUG00005050396	gene segment	Chr14:44563437-44563495 (+)
CBA/J	ENSMUSG00210046248	gene segment	Chr14:43247866-43247924 (+)
DBA/2J	ENSMUSG00185054668	gene segment	Chr14:48288552-48288610 (+)
FVB/NJ	ENSMUSG00205046570	gene segment	Chr14:42630792-42630850 (+)
JF1/MsJ	ENSUMUG00000055801	gene segment	Chr14:59547089-59547147 (+)
LP/J	ENSMUSG00230053165	gene segment	Chr14:60402813-60402871 (+)
NOD/ShiLtJ	ENSMUSG00190051031	gene segment	Chr14:42991614-42991672 (+)
NZO/HlLtJ	ENSMUSG00225051431	gene segment	Chr14:50700906-50700964 (+)
PWK/PhJ	ENSLUMG00010048101	gene segment	Chr14:42470924-42470982 (+)
SPRET/EiJ	ENSMSPG00010046633	gene segment	Chr14:45861448-45861506 (+)
WSB/EiJ	ENSIUOG00005044483	gene segment	Chr14:42462641-42462699 (+)

Homology

• Gene Tree
  Traj11
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj11
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076918 (Evidence)
• NCBI Gene
  100124392

Representative Sequences			Length	Strain/Species
genomic	100124392	NCBI Gene Model | MGI Sequence Detail	59	C57BL/6J
polypeptide	A0A0G2JE76	UniProt | EBI | MGI Sequence Detail	20	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125591	Chr14:54444556-54444565 (+)	-35 bp