Traj9 Gene Detail

Summary

• Symbol
  Traj9
• Name
  T cell receptor alpha joining 9
• Synonyms
  Gm16653

• Feature Type
  gene segment
• IDs
  MGI:4439577
  NCBI Gene: 100124393
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54446850-54446907 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  39 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439577	gene segment	Chr14:54446850-54446907 (+)
129S1/SvImJ	ENSMUSG00200045452	gene segment	Chr14:43039084-43039141 (+)
A/J	ENSMUSG00195033801	gene segment	Chr14:43263365-43263422 (+)
AKR/J	ENSMUSG00220031545	gene segment	Chr14:42591305-42591362 (+)
BALB/cJ	ENSMUSG00180052087	gene segment	Chr14:42887128-42887185 (+)
C3H/HeJ	ENSMUSG00175052400	gene segment	Chr14:44569567-44569624 (+)
C57BL/6NJ	ENSMUSG00215050131	gene segment	Chr14:42769150-42769207 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002172	gene segment	Chr14:45642300-45642357 (+)
CAST/EiJ	ENSTCUG00005050375	gene segment	Chr14:44565694-44565751 (+)
CBA/J	ENSMUSG00210046194	gene segment	Chr14:43250131-43250188 (+)
DBA/2J	ENSMUSG00185054642	gene segment	Chr14:48290821-48290878 (+)
FVB/NJ	ENSMUSG00205046518	gene segment	Chr14:42633061-42633118 (+)
JF1/MsJ	ENSUMUG00000055742	gene segment	Chr14:59549343-59549400 (+)
LP/J	ENSMUSG00230053136	gene segment	Chr14:60405078-60405135 (+)
NOD/ShiLtJ	ENSMUSG00190050988	gene segment	Chr14:42993883-42993940 (+)
NZO/HlLtJ	ENSMUSG00225051386	gene segment	Chr14:50703171-50703228 (+)
PWK/PhJ	ENSLUMG00010048026	gene segment	Chr14:42473189-42473246 (+)
SPRET/EiJ	ENSMSPG00010046605	gene segment	Chr14:45863698-45863755 (+)
WSB/EiJ	ENSIUOG00005044386	gene segment	Chr14:42464896-42464953 (+)

Homology

• Gene Tree
  Traj9
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  3
• Targeted
  3
• Genomic Mutations
  3 involving Traj9
• Find Mice (IMSR)
  2 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076919 (Evidence)
• NCBI Gene
  100124393

Representative Sequences			Length	Strain/Species
genomic	100124393	NCBI Gene Model | MGI Sequence Detail	58	C57BL/6J
polypeptide	A0A0G2JEW3	UniProt | EBI | MGI Sequence Detail	19	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 18

  Phenotypes 2
• Earliest
  J:7626 Chien Y, et al., A third type of murine T-cell receptor gene. Nature. 1984 Nov 1-7;312(5989):31-5
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Traj9:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125592	Chr14:54445272-54445284 (+)	-1,572 bp
Tssr125593	Chr14:54445633-54445677 (+)	-1,195 bp