Trbd1 Gene Detail

Summary

• Symbol
  Trbd1
• Name
  T cell receptor beta, D region 1
• Synonyms
  Gm16647, Tcrb-D1

• Feature Type
  gene segment
• IDs
  MGI:4439571
  NCBI Gene: 100125246
• Alliance
  genome feature page
• Transcription Start Sites
  11 TSS
• Regulated by
  Rr149350 (1 regulatory region)

Location &
Maps

• Sequence Map
  Chr6:41510135-41510146 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  163 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439571	gene segment	Chr6:41510135-41510146 (+)
129S1/SvImJ	ENSMUSG00200046930	gene segment	Chr6:38568038-38568049 (+)
A/J	ENSMUSG00195042782	gene segment	Chr6:38537730-38537741 (+)
AKR/J	ENSMUSG00220009827	gene segment	Chr6:38138523-38138534 (+)
BALB/cJ	ENSMUSG00180046449	gene segment	Chr6:38666111-38666122 (+)
C3H/HeJ	ENSMUSG00175049911	gene segment	Chr6:38493226-38493237 (+)
C57BL/6NJ	ENSMUSG00215049027	gene segment	Chr6:38591900-38591911 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002124	gene segment	Chr6:36074321-36074332 (+)
CAST/EiJ	ENSTCUG00005036857	gene segment	Chr6:37998211-37998222 (+)
CBA/J	ENSMUSG00210052363	gene segment	Chr6:38544988-38544999 (+)
DBA/2J	ENSMUSG00185050405	gene segment	Chr6:38647481-38647492 (+)
FVB/NJ	ENSMUSG00205050667	gene segment	Chr6:38447105-38447116 (+)
JF1/MsJ	ENSUMUG00000029113	gene segment	Chr6:38191234-38191245 (+)
LP/J	ENSMUSG00230043787	gene segment	Chr6:39571160-39571171 (+)
NOD/ShiLtJ	ENSMUSG00190050862	gene segment	Chr6:38436940-38436951 (+)
NZO/HlLtJ	ENSMUSG00225020769	gene segment	Chr6:41553796-41553807 (+)
PWK/PhJ	ENSLUMG00010046990	gene segment	Chr6:38022559-38022570 (+)
SPRET/EiJ	ENSMSPG00010033408	gene segment	Chr6:38744183-38744194 (+)
WSB/EiJ	ENSIUOG00005035121	gene segment	Chr6:38700073-38700084 (+)

Homology

• Gene Tree
  Trbd1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000095668 (Evidence)
• NCBI Gene
  100125246

Representative Sequences			Length	Strain/Species
genomic	100125246	NCBI Gene Model | MGI Sequence Detail	12	C57BL/6J

References

• Summaries
  All 7
• Earliest
  J:7596 Siu G, et al., The structure, rearrangement and expression of D beta gene segments of the murine T-cell antigen receptor. Nature. 1984 Sep 27-Oct 3;311(5984):344-50
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

Trbd1 expression regulated by:

Feature	Feature Type	Location	Reference
Rr149350, regulatory region 149350	enhancer	Chr6:41509067-41510140	J:54060

TSS for Trbd1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55886	Chr6:41509855-41509868 (+)	-273 bp
Tssr55887	Chr6:41509883-41509904 (+)	-241 bp
Tssr55888	Chr6:41509916-41509937 (+)	-208 bp
Tssr55889	Chr6:41509942-41509949 (+)	-189 bp
Tssr55890	Chr6:41509951-41509971 (+)	-174 bp
Tssr55891	Chr6:41509972-41509981 (+)	-158 bp
Tssr55892	Chr6:41510020-41510031 (+)	-109 bp
Tssr55893	Chr6:41510048-41510066 (+)	-78 bp
Tssr55894	Chr6:41510081-41510093 (+)	-48 bp
Tssr55895	Chr6:41510108-41510123 (+)	-19 bp
Tssr55896	Chr6:41510138-41510153 (+)	11 bp