Trbj1-3 Gene Detail

Summary

• Symbol
  Trbj1-3
• Name
  T cell receptor beta joining 1-3
• Synonyms
  Gm16644

• Feature Type
  gene segment
• IDs
  MGI:4439568
  NCBI Gene: 100125250
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr6:41511257-41511306 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 19.69 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439568	gene segment	Chr6:41511257-41511306 (+)
129S1/SvImJ	ENSMUSG00200046942	gene segment	Chr6:38569160-38569213 (+)
A/J	ENSMUSG00195042798	gene segment	Chr6:38538852-38538905 (+)
AKR/J	ENSMUSG00220009831	gene segment	Chr6:38139645-38139698 (+)
BALB/cJ	ENSMUSG00180046462	gene segment	Chr6:38667233-38667286 (+)
C3H/HeJ	ENSMUSG00175049923	gene segment	Chr6:38494348-38494401 (+)
C57BL/6NJ	ENSMUSG00215049040	gene segment	Chr6:38593022-38593075 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002181	gene segment	Chr6:36075446-36075499 (+)
CAST/EiJ	ENSTCUG00005036889	gene segment	Chr6:37999358-37999411 (+)
CBA/J	ENSMUSG00210052365	gene segment	Chr6:38546110-38546163 (+)
DBA/2J	ENSMUSG00185050416	gene segment	Chr6:38648603-38648656 (+)
FVB/NJ	ENSMUSG00205050679	gene segment	Chr6:38448231-38448284 (+)
JF1/MsJ	ENSUMUG00000029141	gene segment	Chr6:38192380-38192433 (+)
LP/J	ENSMUSG00230043290	gene segment	Chr6:39572282-39572335 (+)
NOD/ShiLtJ	ENSMUSG00190050878	gene segment	Chr6:38438062-38438115 (+)
NZO/HlLtJ	ENSMUSG00225020015	gene segment	Chr6:41554918-41554971 (+)
PWK/PhJ	ENSLUMG00010047011	gene segment	Chr6:38023681-38023734 (+)
SPRET/EiJ	ENSMSPG00010033432	gene segment	Chr6:38745293-38745346 (+)
WSB/EiJ	ENSIUOG00005035143	gene segment	Chr6:38701253-38701306 (+)

Homology

• Gene Tree
  Trbj1-3
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000076485 (Evidence)
• NCBI Gene
  100125250

Representative Sequences			Length	Strain/Species
genomic	100125250	NCBI Gene Model | MGI Sequence Detail	50	C57BL/6J
polypeptide	A0A0A6YXA0	UniProt | EBI | MGI Sequence Detail	17	Not Applicable

Protein
Information

• UniProt
  1 Sequence

References

• Summaries
  All 7
• Earliest
  J:7518 Gascoigne NR, et al., Genomic organization and sequence of T-cell receptor beta-chain constant- and joining-region genes. Nature. 1984 Aug 2-8;310(5976):387-91
• Latest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trbj1-3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr55909	Chr6:41511249-41511272 (+)	4 bp