Trdd1 Gene Detail

Summary

• Symbol
  Trdd1
• Name
  T cell receptor delta diversity 1
• Synonyms
  Gm16623

• Feature Type
  gene segment
• IDs
  MGI:4439547
  NCBI Gene: 100114902
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr14:54350925-54350933 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.65 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  33 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439547	gene segment	Chr14:54350925-54350935 (+)
129S1/SvImJ	ENSMUSG00200042480	gene segment	Chr14:42950114-42950124 (+)
A/J	ENSMUSG00195036485	gene segment	Chr14:43174372-43174382 (+)
AKR/J	ENSMUSG00220037143	gene segment	Chr14:42502296-42502306 (+)
BALB/cJ	ENSMUSG00180051751	gene segment	Chr14:42798142-42798152 (+)
C3H/HeJ	ENSMUSG00175051895	gene segment	Chr14:44480589-44480599 (+)
C57BL/6NJ	ENSMUSG00215049573	gene segment	Chr14:42673208-42673218 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002122	gene segment	Chr14:45554068-45554078 (+)
CAST/EiJ	ENSTCUG00005049424	gene segment	Chr14:44476658-44476668 (+)
CBA/J	ENSMUSG00210045635	gene segment	Chr14:43161148-43161158 (+)
DBA/2J	ENSMUSG00185054496	gene segment	Chr14:48201826-48201836 (+)
FVB/NJ	ENSMUSG00205042464	gene segment	Chr14:42543998-42544008 (+)
JF1/MsJ	ENSUMUG00000052993	gene segment	Chr14:59453441-59453451 (+)
LP/J	ENSMUSG00230053049	gene segment	Chr14:60316108-60316118 (+)
NOD/ShiLtJ	ENSMUSG00190046835	gene segment	Chr14:42904815-42904825 (+)
NZO/HlLtJ	ENSMUSG00225051996	gene segment	Chr14:50614189-50614199 (+)
PWK/PhJ	ENSLUMG00010048881	gene segment	Chr14:42384209-42384219 (+)
SPRET/EiJ	ENSMSPG00010049490	gene segment	Chr14:45774940-45774950 (+)
WSB/EiJ	ENSIUOG00005048434	gene segment	Chr14:42375773-42375783 (+)

Homology

• Gene Tree
  Trdd1
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1

• Ensembl
  ENSMUSG00000096749 (Evidence)
• NCBI Gene
  100114902

Representative Sequences			Length	Strain/Species
genomic	100114902	NCBI Gene Model | MGI Sequence Detail	9	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trdd1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125526	Chr14:54350784-54350795 (+)	-135 bp
Tssr125527	Chr14:54350892-54350903 (+)	-27 bp