Trdd2 Gene Detail

Summary

• Symbol
  Trdd2
• Name
  T cell receptor delta diversity 2
• Synonyms
  Gm16622

• Feature Type
  gene segment
• IDs
  MGI:4439546
  NCBI Gene: 100114904
• Alliance
  genome feature page
• Transcription Start Sites
  11 TSS

Location &
Maps

• Sequence Map
  Chr14:54359683-54359698 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 14, 27.66 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  38 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4439546	gene segment	Chr14:54359683-54359698 (+)
129S1/SvImJ	ENSMUSG00200042522	gene segment	Chr14:42958866-42958881 (+)
A/J	ENSMUSG00195034316	gene segment	Chr14:43183124-43183139 (+)
AKR/J	ENSMUSG00220030814	gene segment	Chr14:42511048-42511063 (+)
BALB/cJ	ENSMUSG00180053541	gene segment	Chr14:42806894-42806909 (+)
C3H/HeJ	ENSMUSG00175052775	gene segment	Chr14:44489341-44489356 (+)
C57BL/6NJ	ENSMUSG00215049394	gene segment	Chr14:42681966-42681981 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0002123	gene segment	Chr14:45562410-45562425 (+)
CAST/EiJ	ENSTCUG00005051013	gene segment	Chr14:44485416-44485431 (+)
CBA/J	ENSMUSG00210049368	gene segment	Chr14:43169900-43169915 (+)
DBA/2J	ENSMUSG00185056127	gene segment	Chr14:48210534-48210549 (+)
FVB/NJ	ENSMUSG00205044277	gene segment	Chr14:42552750-42552765 (+)
JF1/MsJ	ENSUMUG00000055578	gene segment	Chr14:59462199-59462214 (+)
LP/J	ENSMUSG00230052931	gene segment	Chr14:60324860-60324875 (+)
NOD/ShiLtJ	ENSMUSG00190050169	gene segment	Chr14:42913567-42913582 (+)
NZO/HlLtJ	ENSMUSG00225051776	gene segment	Chr14:50622941-50622956 (+)
PWK/PhJ	ENSLUMG00010050728	gene segment	Chr14:42392961-42392976 (+)
SPRET/EiJ	ENSMSPG00010046936	gene segment	Chr14:45783694-45783709 (+)
WSB/EiJ	ENSIUOG00005044664	gene segment	Chr14:42384481-42384496 (+)

Homology

• Gene Tree
  Trdd2
  

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000096176 (Evidence)
• NCBI Gene
  100114904

Representative Sequences			Length	Strain/Species
genomic	100114904	NCBI Gene Model | MGI Sequence Detail	16	C57BL/6J

References

• Summaries
  All 5
• Earliest
  J:164272 Giudicelli V, et al., IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D256-61

TSS for Trdd2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr125528	Chr14:54357827-54357850 (+)	-1,844 bp
Tssr125529	Chr14:54358927-54358948 (+)	-745 bp
Tssr125530	Chr14:54359332-54359361 (+)	-336 bp
Tssr125531	Chr14:54359364-54359380 (+)	-311 bp
Tssr125532	Chr14:54359382-54359393 (+)	-295 bp
Tssr125533	Chr14:54359494-54359497 (+)	-187 bp
Tssr125534	Chr14:54359570-54359590 (+)	-103 bp
Tssr125535	Chr14:54359599-54359604 (+)	-81 bp
Tssr125536	Chr14:54359618-54359641 (+)	-53 bp
Tssr125537	Chr14:54359647-54359685 (+)	-17 bp
Tssr125538	Chr14:54359687-54359705 (+)	13 bp