Vmn1r196 Gene Detail

Summary

• Symbol
  Vmn1r196
• Name
  vomeronasal 1 receptor 196
• Synonyms
  V1rh19

• Feature Type
  protein coding gene
• IDs
  MGI:4438447
  NCBI Gene: 100312484
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr13:22477363-22478268 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, 8.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  13 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4438447	protein coding gene	Chr13:22474090-22482530 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0020316	protein coding gene	Chr13:19625747-19626652 (+)
A/J	MGP_AJ_G0020274	protein coding gene	Chr13:19217139-19218044 (+)
AKR/J	MGP_AKRJ_G0020245	protein coding gene	Chr13:19513155-19514060 (+)
BALB/cJ	MGP_BALBcJ_G0020261	protein coding gene	Chr13:19218461-19219366 (+)
C3H/HeJ	MGP_C3HHeJ_G0020069	protein coding gene	Chr13:19581636-19582541 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0020702	protein coding gene	Chr13:20320581-20321486 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0018306	protein coding gene	Chr13:17397007-17397912 (+)
CAST/EiJ	MGP_CASTEiJ_G0019593	protein coding gene	Chr13:19394088-19394993 (+)
CBA/J	MGP_CBAJ_G0020021	protein coding gene	Chr13:21016106-21017011 (+)
DBA/2J	MGP_DBA2J_G0020147	protein coding gene	Chr13:18818404-18819309 (+)
FVB/NJ	MGP_FVBNJ_G0020132	protein coding gene	Chr13:18447786-18448691 (+)
LP/J	MGP_LPJ_G0020221	protein coding gene	Chr13:19856426-19857331 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0020165	protein coding gene	Chr13:21359360-21360265 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0020734	protein coding gene	Chr13:19295788-19297648 (+)
PWK/PhJ	MGP_PWKPhJ_G0019351	protein coding gene	Chr13:18911860-18912975 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0019160	protein coding gene	Chr13:18249402-18250307 (+)
WSB/EiJ	MGP_WSBEiJ_G0019652	protein coding gene	Chr13:19442035-19442940 (+)

Homology

• MGI Vertebrate Homology
  Vmn1r196 stringent orthology
  1 mouse;1 zebrafish
  
• Gene Tree
  Vmn1r196
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  8 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Vmn1r196
• Incidental Mutations
  APF
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  36
• RefSeq
  2
• UniProt
  3
• CCDS
  CCDS49219.1

• Ensembl
  ENSMUSG00000069295 (Evidence)
• NCBI Gene
  100312484

Representative Sequences			Length	Strain/Species
genomic	100312484	NCBI Gene Model | MGI Sequence Detail	906	C57BL/6J
transcript	NM_001167541	RefSeq | MGI Sequence Detail	906	Not Specified
polypeptide	NP_001161013	RefSeq | MGI Sequence Detail	301	Not Specified

Protein
Information

• UniProt
  3 Sequences
• InterPro Domains
  IPR017452 GPCR, rhodopsin-like, 7TM
  IPR004072 Vomeronasal receptor, type 1

Molecular
Reagents

• 
  

  Microarray probesets 1

Other
Accession IDs

MGI:2159684

References

• Summaries
  All 18

  Phenotypes 8
• Earliest
  J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
• Latest
  J:150929 Young J, et al., Extreme variability among mammalian V1R gene families. Genome Biol Evol. 2009;20(1):10-18