F630040K05Rik Gene Detail

Summary

• Symbol
  F630040K05Rik
• Name
  RIKEN cDNA F630040K05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:4437734
  NCBI Gene: 433111
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr17:46045432-46092178 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 22.60 cM

Strain
Comparison

• SNPs within 2kb
  1357 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4437734	lncRNA gene	Chr17:46044274-46099520 (+)
129S1/SvImJ	ENSMUSG00200028410	lncRNA gene	Chr17:41248101-41302528 (+)
A/J	ENSMUSG00195022153	lncRNA gene	Chr17:42748123-42802479 (+)
AKR/J	ENSMUSG00220036957	lncRNA gene	Chr17:41733321-41787651 (+)
BALB/cJ	ENSMUSG00180026416	lncRNA gene	Chr17:42498090-42552412 (+)
C3H/HeJ	ENSMUSG00175016668	lncRNA gene	Chr17:41812094-41866415 (+)
C57BL/6NJ	ENSMUSG00215035640	lncRNA gene	Chr17:41367681-41421960 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0005215	lincRNA gene	Chr17:42453570-42485606 (+)
CAST/EiJ	ENSTCUG00005025590	lncRNA gene	Chr17:42543289-42597681 (+)
CBA/J	ENSMUSG00210039176	lncRNA gene	Chr17:41561810-41616129 (+)
DBA/2J	ENSMUSG00185030314	lncRNA gene	Chr17:44467409-44521770 (+)
FVB/NJ	ENSMUSG00205052672	lncRNA gene	Chr17:42041096-42095511 (+)
JF1/MsJ	ENSUMUG00000035978	lncRNA gene	Chr17:44075224-44129360 (+)
LP/J	ENSMUSG00230041637	lncRNA gene	Chr17:45355405-45409767 (+)
NOD/ShiLtJ	ENSMUSG00190017857	lncRNA gene	Chr17:41439297-41494501 (+)
NZO/HlLtJ	ENSMUSG00225043819	lncRNA gene	Chr17:47617519-47671896 (+)
PWK/PhJ	ENSLUMG00010035786	lncRNA gene	Chr17:41313672-41368869 (+)
SPRET/EiJ	ENSMSPG00010037385	lncRNA gene	Chr17:41537203-41591494 (+)
WSB/EiJ	ENSIUOG00005027482	lncRNA gene	Chr17:42414408-42468788 (+)

Homology

• Gene Tree
  F630040K05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  6

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  95
• RefSeq
  1

• Ensembl
  ENSMUSG00000097727 (Evidence)
• NCBI Gene
  433111

Representative Sequences			Length	Strain/Species
genomic	433111	NCBI Gene Model | MGI Sequence Detail	46747	C57BL/6J
transcript	NR_152153	RefSeq | MGI Sequence Detail	2634	C57BL/6

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 11

  Phenotypes 2
• Earliest
  J:86696 Zambrowicz BP, et al., Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Proc Natl Acad Sci U S A. 2003 Nov 25;100(24):14109-14
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for F630040K05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr144810	Chr17:46045511-46045556 (+)	102 bp
Tssr5132	Chr17:46058045-46058055 (+)	12,618 bp
Tssr144811	Chr17:46069175-46069184 (+)	23,748 bp