D030040B21Rik Gene Detail

Summary

• Symbol
  D030040B21Rik
• Name
  RIKEN cDNA D030040B21 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:4437728
  NCBI Gene: 329101
• Alliance
  genome feature page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr1:16727776-16732502 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 5.10 cM

Strain
Comparison

• SNPs within 2kb
  186 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4437728	lncRNA gene	Chr1:16727154-16732505 (+)
129S1/SvImJ	ENSMUSG00200019019	lncRNA gene	Chr1:14117871-14122598 (+)
A/J	ENSMUSG00195027710	lncRNA gene	Chr1:13906750-13911485 (+)
AKR/J	ENSMUSG00220008520	lncRNA gene	Chr1:13961480-13966206 (+)
BALB/cJ	ENSMUSG00180025378	lncRNA gene	Chr1:13973106-13977841 (+)
C3H/HeJ	ENSMUSG00175000345	lncRNA gene	Chr1:13899162-13903897 (+)
C57BL/6NJ	ENSMUSG00215014714	lncRNA gene	Chr1:13941556-13946282 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004323	lincRNA gene	Chr1:12596838-12601261 (+)
CAST/EiJ	ENSTCUG00005022585	lncRNA gene	Chr1:14238990-14243811 (+)
CBA/J	ENSMUSG00210002803	lncRNA gene	Chr1:13764897-13769632 (+)
DBA/2J	ENSMUSG00185004051	lncRNA gene	Chr1:14829173-14833907 (+)
FVB/NJ	ENSMUSG00205016378	lncRNA gene	Chr1:14000935-14005670 (+)
JF1/MsJ	ENSUMUG00000023920	lncRNA gene	Chr1:14091589-14105087 (+)
LP/J	ENSMUSG00230019453	lncRNA gene	Chr1:14819210-14823937 (+)
NOD/ShiLtJ	ENSMUSG00190034064	lncRNA gene	Chr1:13874448-13879183 (+)
NZO/HlLtJ	ENSMUSG00225005998	lncRNA gene	Chr1:18215687-18220421 (+)
PWK/PhJ	ENSLUMG00010022772	lncRNA gene	Chr1:13690172-13694990 (+)
SPRET/EiJ	ENSMSPG00010030262	lncRNA gene	Chr1:14516666-14521455 (+)
WSB/EiJ	ENSIUOG00005012179	lncRNA gene	Chr1:13849018-13853744 (+)

Homology

• Gene Tree
  D030040B21Rik
  

Expression

• Assay Results
  599
• Tissues
  2
• cDNA Data
  5
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  37
• RefSeq
  1

• Ensembl
  ENSMUSG00000097744 (Evidence)
• NCBI Gene
  329101

Representative Sequences			Length	Strain/Species
genomic	329101	NCBI Gene Model | MGI Sequence Detail	4727	C57BL/6J
transcript	NR_037998	RefSeq | MGI Sequence Detail	2788	C57BL/6

Molecular
Reagents

• All nucleic 5

  cDNA 5

References

• Summaries
  All 9

  Developmental Gene Expression 1
• Earliest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for D030040B21Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr6002	Chr1:16727203-16727208 (+)	-570 bp
Tssr6003	Chr1:16731756-16731769 (+)	3,987 bp
Tssr6004	Chr1:16731792-16731798 (+)	4,019 bp
Tssr13	Chr1:16731832-16731839 (+)	4,060 bp