A830021M18Rik Gene Detail

Summary

• Symbol
  A830021M18Rik
• Name
  RIKEN cDNA A830021M18 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:4437721
  NCBI Gene: 223483
• Alliance
  genome feature page
• Transcription Start Sites
  7 TSS

Location &
Maps

• Sequence Map
  Chr15:36726486-36731661 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 15, Syntenic

Strain
Comparison

• SNPs within 2kb
  360 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4437721	lncRNA gene	Chr15:36726486-36743939 (+)
129S1/SvImJ	ENSMUSG00200028008	lncRNA gene	Chr15:33736260-33738208 (+)
A/J	ENSMUSG00195036481	lncRNA gene	Chr15:33665521-33667466 (+)
AKR/J	ENSMUSG00220028866	lncRNA gene	Chr15:33579458-33581402 (+)
BALB/cJ	ENSMUSG00180032868	lncRNA gene	Chr15:33627654-33629601 (+)
C3H/HeJ	ENSMUSG00175028521	lncRNA gene	Chr15:33831956-33833902 (+)
C57BL/6NJ	ENSMUSG00215023776	lncRNA gene	Chr15:33639805-33641750 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005011300	lncRNA gene	Chr15:33667666-33669615 (+)
CBA/J	ENSMUSG00210018159	lncRNA gene	Chr15:33746394-33748340 (+)
DBA/2J	ENSMUSG00185035922	lncRNA gene	Chr15:33727236-33729182 (+)
FVB/NJ	ENSMUSG00205035486	lncRNA gene	Chr15:33637057-33639002 (+)
JF1/MsJ	ENSUMUG00000035073	lncRNA gene	Chr15:33612479-33614426 (+)
LP/J	no annotation
NOD/ShiLtJ	ENSMUSG00190032896	lncRNA gene	Chr15:33708512-33710458 (+)
NZO/HlLtJ	ENSMUSG00225031848	lncRNA gene	Chr15:37418733-37420678 (+)
PWK/PhJ	ENSLUMG00010032978	lncRNA gene	Chr15:33787927-33789878 (+)
SPRET/EiJ	ENSMSPG00010013229	lncRNA gene	Chr15:34423736-34425880 (+)
WSB/EiJ	ENSIUOG00005032588	lncRNA gene	Chr15:33749137-33751081 (+)

Homology

• Gene Tree
  A830021M18Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  4
• Chemically induced (other)
  2
• Gene trapped
  2
• Genomic Mutations
  2 involving A830021M18Rik
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  2
• Tissues
  1
• cDNA Data
  6
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO

Sequences &
Gene Models

• All Sequences
  31
• RefSeq
  3

• Ensembl
  ENSMUSG00000120875 (Evidence)
• NCBI Gene
  223483

Representative Sequences			Length	Strain/Species
genomic	223483	NCBI Gene Model | MGI Sequence Detail	5176	C57BL/6J
transcript	AK043703	GenBank | ENA | DDBJ | MGI Sequence Detail	972	C57BL/6J

Molecular
Reagents

• All nucleic 6

  cDNA 6

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for A830021M18Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr131078	Chr15:36725515-36725521 (+)	-968 bp
Tssr131079	Chr15:36726564-36726569 (+)	81 bp
Tssr131080	Chr15:36726605-36726623 (+)	128 bp
Tssr131081	Chr15:36726636-36726645 (+)	155 bp
Tssr131082	Chr15:36726911-36726940 (+)	440 bp
Tssr131083	Chr15:36727104-36727116 (+)	624 bp
Tssr131084	Chr15:36727150-36727185 (+)	682 bp