Gm16580 Pseudogene Detail

Summary

• Symbol
  Gm16580
• Name
  predicted gene 16580

• Feature Type
  pseudogene
• IDs
  MGI:4415000
  NCBI Gene: 100417756
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr17:26488311-26489355 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 17, 13.10 cM

Strain
Comparison

• SNPs within 2kb
  167 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4415000	pseudogene	Chr17:26488311-26489358 (+)
129S1/SvImJ	ENSMUSG00200053857	pseudogene	Chr17:21934383-21935446 (+)
A/J	ENSMUSG00195054425	pseudogene	Chr17:22961790-22962853 (+)
AKR/J	ENSMUSG00220053842	pseudogene	Chr17:21998377-21999440 (+)
BALB/cJ	ENSMUSG00180050886	pseudogene	Chr17:22232441-22233504 (+)
C3H/HeJ	ENSMUSG00175053710	pseudogene	Chr17:21990622-21991685 (+)
C57BL/6NJ	ENSMUSG00215054366	pseudogene	Chr17:21997932-21998979 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005051898	pseudogene	Chr17:22592043-22593088 (+)
CBA/J	ENSMUSG00210050963	pseudogene	Chr17:21829484-21830547 (+)
DBA/2J	ENSMUSG00185053745	pseudogene	Chr17:24049982-24051045 (+)
FVB/NJ	ENSMUSG00205053251	pseudogene	Chr17:22305727-22306790 (+)
JF1/MsJ	ENSUMUG00000057556	pseudogene	Chr17:23495552-23496610 (+)
LP/J	ENSMUSG00230055082	pseudogene	Chr17:25438895-25439958 (+)
NOD/ShiLtJ	ENSMUSG00190054113	pseudogene	Chr17:21938722-21939785 (+)
NZO/HlLtJ	ENSMUSG00225054849	pseudogene	Chr17:27369065-27370128 (+)
PWK/PhJ	ENSLUMG00010053303	pseudogene	Chr17:21408712-21409770 (+)
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005051249	pseudogene	Chr17:22684758-22685816 (+)

Homology

• Gene Tree
  Gm16580
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  2
• Genomic Mutations
  2 involving Gm16580
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000089764 (Evidence)
• NCBI Gene
  100417756

Representative Sequences			Length	Strain/Species
genomic	100417756	NCBI Gene Model | MGI Sequence Detail	1045	C57BL/6J

References

• Summaries
  All 8

  Phenotypes 3
• Earliest
  J:86784 Bergstrom DE, et al., Overlapping deletions spanning the proximal two-thirds of the mouse t complex. Mamm Genome. 2003 Dec;14(12):817-29
• Latest
  J:194116 Flachs P, et al., Interallelic and intergenic incompatibilities of the Prdm9 (Hst1) gene in mouse hybrid sterility. PLoS Genet. 2012;8(11):e1003044

TSS for Gm16580:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr143221	Chr17:26489234-26489266 (+)	939 bp
Tssr143222	Chr17:26489326-26489360 (+)	1,032 bp