Gm16565 Gene Detail

Summary

• Symbol
  Gm16565
• Name
  predicted gene 16565

• Feature Type
  lncRNA gene
• IDs
  MGI:4414985
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr1:165607638-165616936 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 73.13 cM

Strain
Comparison

• SNPs within 2kb
  446 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414985	lncRNA gene	Chr1:165607638-165616936 (+)
129S1/SvImJ	ENSMUSG00200046725	lncRNA gene	Chr1:163109443-163117735 (+)
A/J	ENSMUSG00195048562	lncRNA gene	Chr1:162418046-162426340 (+)
AKR/J	ENSMUSG00220014182	lncRNA gene	Chr1:162206583-162214875 (+)
BALB/cJ	ENSMUSG00180037362	lncRNA gene	Chr1:162663456-162671750 (+)
C3H/HeJ	ENSMUSG00175044886	lncRNA gene	Chr1:162759202-162767494 (+)
C57BL/6NJ	ENSMUSG00215040700	lncRNA gene	Chr1:162545109-162553401 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013261	unclassified non-coding RNA gene	Chr1:156187895-156196007 (+)
CAST/EiJ	ENSTCUG00005021219	lncRNA gene	Chr1:161178987-161187270 (+)
CBA/J	ENSMUSG00210021755	lncRNA gene	Chr1:162633673-162641965 (+)
DBA/2J	ENSMUSG00185011879	lncRNA gene	Chr1:166881148-166889378 (+)
FVB/NJ	ENSMUSG00205010274	lncRNA gene	Chr1:161672671-161680971 (+)
JF1/MsJ	ENSUMUG00000012009	lncRNA gene	Chr1:166032256-166040479 (+)
LP/J	ENSMUSG00230026638	lncRNA gene	Chr1:166498528-166506820 (+)
NOD/ShiLtJ	ENSMUSG00190039600	lncRNA gene	Chr1:162465375-162473679 (+)
NZO/HlLtJ	ENSMUSG00225004813	lncRNA gene	Chr1:170084326-170092618 (+)
PWK/PhJ	ENSLUMG00010045337	lncRNA gene	Chr1:161402891-161411320 (+)
SPRET/EiJ	ENSMSPG00010049138	lncRNA gene	Chr1:164899638-164907631 (+)
WSB/EiJ	ENSIUOG00005015857	lncRNA gene	Chr1:161946798-161955113 (+)

Homology

• Gene Tree
  Gm16565
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm16565
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25

• Ensembl
  ENSMUSG00000089829 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089829	Ensembl Gene Model | MGI Sequence Detail	9299	C57BL/6J
transcript	ENSMUST00000159138	Ensembl | MGI Sequence Detail	2181	Not Applicable

References

• Summaries
  All 6

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm16565:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr9840	Chr1:165608293-165608323 (+)	670 bp
Tssr9841	Chr1:165608324-165608340 (+)	694 bp