Gm16548 Gene Detail

Summary

• Symbol
  Gm16548
• Name
  predicted gene 16548

• Feature Type
  lncRNA gene
• IDs
  MGI:4414968
  NCBI Gene: 100503816
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:163976145-163979786 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 71.46 cM

Strain
Comparison

• SNPs within 2kb
  240 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414968	lncRNA gene	Chr1:163970999-163979883 (-)
129S1/SvImJ	ENSMUSG00200006843	lncRNA gene	Chr1:161446682-161450308 (-)
A/J	ENSMUSG00195023553	lncRNA gene	Chr1:160786910-160790536 (-)
AKR/J	ENSMUSG00220014040	lncRNA gene	Chr1:160567548-160571174 (-)
BALB/cJ	ENSMUSG00180041259	lncRNA gene	Chr1:161028857-161032483 (-)
C3H/HeJ	ENSMUSG00175044595	lncRNA gene	Chr1:161119476-161123102 (-)
C57BL/6NJ	ENSMUSG00215040735	lncRNA gene	Chr1:160996682-161000308 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004543	lincRNA gene	Chr1:154644223-154647674 (-)
CAST/EiJ	ENSTCUG00005021145	lncRNA gene	Chr1:159599781-159603303 (-)
CBA/J	ENSMUSG00210021804	lncRNA gene	Chr1:160992090-160995718 (-)
DBA/2J	ENSMUSG00185012353	lncRNA gene	Chr1:165232549-165236107 (-)
FVB/NJ	ENSMUSG00205010426	lncRNA gene	Chr1:160074119-160077741 (-)
JF1/MsJ	ENSUMUG00000012655	lncRNA gene	Chr1:164382741-164386300 (-)
LP/J	ENSMUSG00230026932	lncRNA gene	Chr1:164857106-164860732 (-)
NOD/ShiLtJ	ENSMUSG00190045239	lncRNA gene	Chr1:160839106-160842728 (-)
NZO/HlLtJ	ENSMUSG00225005012	lncRNA gene	Chr1:168456335-168459961 (-)
PWK/PhJ	ENSLUMG00010045601	lncRNA gene	Chr1:159769007-159772548 (-)
SPRET/EiJ	ENSMSPG00010043019	lncRNA gene	Chr1:163261706-163265337 (-)
WSB/EiJ	ENSIUOG00005015749	lncRNA gene	Chr1:160337139-160340765 (-)

Homology

• Gene Tree
  Gm16548
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm16548
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  51
• RefSeq
  1

• Ensembl
  ENSMUSG00000086593 (Evidence)
• NCBI Gene
  100503816

Representative Sequences			Length	Strain/Species
genomic	100503816	NCBI Gene Model | MGI Sequence Detail	3642	C57BL/6J
transcript	NR_037987	RefSeq | MGI Sequence Detail	1241	ZRU/MplStud

Molecular
Reagents

• All nucleic 3

  cDNA 3

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;

TSS for Gm16548:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr14725	Chr1:163980505-163980531 (-)	-732 bp