Gm16546 Pseudogene Detail

Summary

• Symbol
  Gm16546
• Name
  predicted gene 16546

• Feature Type
  pseudogene
• IDs
  MGI:4414966
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:43195356-43195710 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 22.95 cM

Strain
Comparison

• SNPs within 2kb
  110 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414966	pseudogene	Chr10:43195356-43195710 (+)
129S1/SvImJ	ENSMUSG00200009965	pseudogene	Chr10:40081937-40082291 (+)
A/J	ENSMUSG00195018917	pseudogene	Chr10:40357828-40358182 (+)
AKR/J	ENSMUSG00220029711	pseudogene	Chr10:40047021-40047375 (+)
BALB/cJ	ENSMUSG00180017664	pseudogene	Chr10:40441930-40442284 (+)
C3H/HeJ	ENSMUSG00175012232	pseudogene	Chr10:40236985-40237339 (+)
C57BL/6NJ	ENSMUSG00215011800	pseudogene	Chr10:39986340-39986694 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009419	pseudogene	Chr10:38737293-38737658 (+)
CAST/EiJ	ENSTCUG00005028354	pseudogene	Chr10:40439943-40440305 (+)
CBA/J	ENSMUSG00210025917	pseudogene	Chr10:40130487-40130841 (+)
DBA/2J	ENSMUSG00185007900	pseudogene	Chr10:40283084-40283438 (+)
FVB/NJ	ENSMUSG00205015508	pseudogene	Chr10:40198363-40198717 (+)
JF1/MsJ	ENSUMUG00000033863	pseudogene	Chr10:40087412-40087774 (+)
LP/J	ENSMUSG00230005993	pseudogene	Chr10:42071695-42072049 (+)
NOD/ShiLtJ	ENSMUSG00190034575	pseudogene	Chr10:40411150-40411504 (+)
NZO/HlLtJ	ENSMUSG00225018873	pseudogene	Chr10:46375993-46376347 (+)
PWK/PhJ	ENSLUMG00010008092	pseudogene	Chr10:40181110-40181472 (+)
SPRET/EiJ	ENSMSPG00010013841	pseudogene	Chr10:41220983-41221345 (+)
WSB/EiJ	ENSIUOG00005015332	pseudogene	Chr10:39961721-39962075 (+)

Homology

• Gene Tree
  Gm16546
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Gm16546
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000089673 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089673	Ensembl Gene Model | MGI Sequence Detail	355	C57BL/6J
transcript	ENSMUST00000159442	Ensembl | MGI Sequence Detail	355	Not Applicable

References

• Summaries
  All 9

  Phenotypes 6
• Earliest
  J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Gm16546:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr93130	Chr10:43195304-43195310 (+)	-49 bp