Gm16539 Pseudogene Detail

Summary

• Symbol
  Gm16539
• Name
  predicted gene 16539

• Feature Type
  pseudogene
• IDs
  MGI:4414959
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr1:181259288-181259965 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 84.55 cM

Strain
Comparison

• SNPs within 2kb
  165 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4414959	pseudogene	Chr1:181259288-181259965 (-)
129S1/SvImJ	ENSMUSG00200024037	pseudogene	Chr1:179013215-179013892 (-)
A/J	ENSMUSG00195044319	pseudogene	Chr1:178623118-178623795 (-)
AKR/J	ENSMUSG00220021694	pseudogene	Chr1:177864531-177865208 (-)
BALB/cJ	ENSMUSG00180039340	pseudogene	Chr1:178664468-178665145 (-)
C3H/HeJ	ENSMUSG00175042316	pseudogene	Chr1:178840231-178840908 (-)
C57BL/6NJ	ENSMUSG00215026207	pseudogene	Chr1:178065964-178066641 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037066	pseudogene	Chr1:171307003-171307674 (-)
CAST/EiJ	ENSTCUG00005043033	pseudogene	Chr1:176590464-176591140 (-)
CBA/J	ENSMUSG00210019348	pseudogene	Chr1:178504541-178505218 (-)
DBA/2J	ENSMUSG00185038031	pseudogene	Chr1:183123948-183124625 (-)
FVB/NJ	ENSMUSG00205039850	pseudogene	Chr1:177560822-177561499 (-)
JF1/MsJ	ENSUMUG00000006306	pseudogene	Chr1:182109521-182110197 (-)
LP/J	ENSMUSG00230033050	pseudogene	Chr1:182672503-182673180 (-)
NOD/ShiLtJ	ENSMUSG00190040415	pseudogene	Chr1:178526053-178526730 (-)
NZO/HlLtJ	ENSMUSG00225011158	pseudogene	Chr1:186431609-186432286 (-)
PWK/PhJ	ENSLUMG00010017246	pseudogene	Chr1:177372881-177373558 (-)
SPRET/EiJ	ENSMSPG00010034795	pseudogene	Chr1:180848134-180848792 (-)
WSB/EiJ	ENSIUOG00005011789	pseudogene	Chr1:177731903-177732580 (-)

Homology

• Gene Tree
  Gm16539
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Gm16539
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21

• Ensembl
  ENSMUSG00000089927 (Evidence)

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000089927	Ensembl Gene Model | MGI Sequence Detail	678	C57BL/6J
transcript	ENSMUST00000160086	Ensembl | MGI Sequence Detail	327	Not Applicable

References

• Summaries
  All 5

  Phenotypes 2
• Earliest
  J:23389 Roderick TH, Using inversions to detect and study recessive lethals and detrimentals in mice, in Utilization of Mammalian Specific Locus Studies in Hazard Evaluation and Estimation of Genetic Risk. 1983:135-67.
• Latest
  J:389486 Mouse Genome Informatics and Ensembl Genome Database Project, MGI Strain Genome Feature and Gene Model Load from Ensembl. Database Release. 2026;