n-TDgtc11 Gene Detail

Summary

• Symbol
  n-TDgtc11
• Name
  nuclear encoded tRNA aspartic acid 11 (anticodon GTC)
• Synonyms
  trna84-AspGTC

• Feature Type
  tRNA gene
• IDs
  MGI:4413762
  NCBI Gene: 108168132
• Alliance
  gene page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  Chr13:22095483-22095554 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 13, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  106 from dbSNP Build 142
• Strain Annotations
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_4413762	tRNA gene	Chr13:22095483-22095554 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving n-TDgtc11
• Find Mice (IMSR)
  0 strains or lines available

Sequences &
Gene Models

• All Sequences
  2

• NCBI Gene
  108168132

Representative Sequences			Length	Strain/Species
genomic	108168132	NCBI Gene Model | MGI Sequence Detail	72	C57BL/6J

References

• Summaries
  All 9

  Phenotypes 5
• Earliest
  J:71411 Arkell RM, et al., Genetic, physical, and phenotypic characterization of the Del(13)Svea36H mouse. Mamm Genome. 2001 Sep;12(9):687-94
• Latest
  J:152375 Chan PP, et al., GtRNAdb: a database of transfer RNA genes detected in genomic sequence. Nucleic Acids Res. 2009 Jan;37(Database issue):D93-7

TSS for n-TDgtc11:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr118803	Chr13:22095091-22095101 (+)	-387 bp
Tssr118804	Chr13:22095109-22095119 (+)	-369 bp
Tssr118805	Chr13:22095136-22095145 (+)	-342 bp